Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_009232.2 Length=42572 Score E Sequences producing significant alignments: (Bits) Value seq139038 150 5e-32 >seq139038 Length=11747 Score = 150 bits (166), Expect = 5e-32 Identities = 313/458 (68%), Gaps = 6/458 (1%) Strand=Plus/Minus Query 24870 TGGCCCGCCTGTTTCTGGCGTACTGGACCTATACGCTCAACAACCTGCAAATAGTGCTCC 24929 ||||||||||| | || || ||||| ||||| || || || | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 24930 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGCCCGCCGTCCTGTAAATTCAAGCC 24988 | |||||| | | | | ||||| ||||||| || |||||||| || || || | ||| Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 24989 ATGCCCGGCTGACGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCAAGATTC 25048 |||||||| || ||||| | | | || ||| | ||| ||||||| || Sbjct 10655 GTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTC 10596 Query 25049 CATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGTGCCTGGGGGAATCGCCTAA 25107 || | || || | || |||||| | | ||| |||| ||||||| | | | Sbjct 10595 GATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCA 10537 Query 25108 GAATGCGCTCCAGTTCGTGTTTGAACTGATAGGCCACCAACAACGGCGCACCCTGTAACT 25167 | ||||| ||| | || || | | ||||||||| |||| |||||||| | | || Sbjct 10536 GGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCT 10477 Query 25168 CCTCAACAATCGACTCGAGCGCATCCAGTTTCGTATCGTGCACTTTCTCCCAGTCTTTGG 25227 | ||| ||| ||||||||||| ||||| ||| | || | ||||||||| | Sbjct 10476 CTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTG 10417 Query 25228 TAGCTTCTCCGTCTGGCCCCGAT-ACATACACGGCGCCTGATGCAATCTGCAAACACTTC 25286 | | || ||||| ||| || | ||||| ||||| || || || |||||||| || || Sbjct 10416 TCGGCTCACCGTC-GGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTA 10358 Query 25287 GACGTCTTCGCCGCGGCGTTAGCCGCTTCAACTTCCCC 25324 | |||||| ||||| || ||| | || || |||| ||| Sbjct 10357 GCCGTCTTGGCCGCCGCATTAACGGCGTCGACTTTCCC 10320 Score = 140 bits (154), Expect = 9e-29 Identities = 672/1061 (63%), Gaps = 53/1061 (5%) Strand=Plus/Minus Query 30255 CCGGCGCGGAACGTATCAAGCGCGGTTTCTTCGCCCGCCAGCCATGCAAGCCCACGGCCT 30314 ||||| ||||| || || ||| | | ||||| || || |||||||| | |||||| || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 30315 TCGACGTTAGAGTAATCCGCAACAACAAACTTACGCCCGGCTTCCGGG---ATAATGCAG 30371 || ||||||| ||| || |||||||| | ||| | ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCATC---GCTTCCGCTGCAATAATACAA 7862 Query 30372 CTTCGGACGGTAGACGCTGTTAGCTTGGCCACATCAAAACGGCGGTGTGCACGGCCTTTA 30431 |||||| || || || ||||||||||| | ||| | | | | || ||| | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 30432 AGTAACGCGGCAATACCC----------CTATCCAGTT----CA-------------TCG 30464 |||| | |||| | || | | || || ||| Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 30465 TCGTGATAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAAT 30524 ||||| |||||||| || || || || ||||| ||||| ||| ||| ||||| | | Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 30525 GTTCGCTTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCT 30584 |||||||| || || || ||||| || ||||| ||||| ||| | || | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 30585 AACAGCAACGGCGCGTATTTCGTCGATGCAGTGGATGCAGCCCCGAGACGCATCTCAATA 30644 | | ||| |||||| |||||||| || || || || ||||| ||||| ||||| Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 30645 ATAGTACGCGCATCATCAGGTAAATCCTCATCAGCCAGCAAGTCGTTTAGTGTTGACTTC 30704 ||| || || || || || | ||| ||| | |||| ||| | | |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTC 7502 Query 30705 TGTGCGTTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTA 30764 || || || | | | ||||||||| || || | | || |||| ||| || | Sbjct 7501 TGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCA 7442 Query 30765 CCGGTTAGTGAACC---GCCGTATTTGCGTTGGGCTTCTTCCTGTAGCTCTTCCTTGTGG 30821 ||||| || ||| |||||||||| || || | | || |||| ||| || Sbjct 7441 CCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGC 7385 Query 30822 CGCGTCACTGCTTCAATCGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCG 30881 | | || | | |||| ||| || | || || | ||| || ||||| Sbjct 7384 TCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCA 7325 Query 30882 TTAATTACTTGGTCTAACCAC-AGCACGCGGTCTTCGAACTCAG---AATTCCCCCACTT 30937 ||||| | ||||| || ||| | | |||| ||| | ||| | | |||| | | Sbjct 7324 TTAATGATCTGGTC-AAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCC---ATGT 7269 Query 30938 CGGCATTTTCTTATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCAATAAA 30997 |||| | | | | ||||||||||| || || |||| |||||| | | ||| Sbjct 7268 TGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAA 7209 Query 30998 TTCTGCCCACTCTTTTGGGTGGGTAGCGGCA--GTGTAGCGTCGAATCTTATAGTTCTTA 31055 | ||| |||| ||||| || | || |||||||| || ||||| || |||||| Sbjct 7208 GCGTTTCCATTCTTCGGGGTGCGT--CTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTA 7151 Query 31056 GGCGTAGGCTTACTAAATCGCTGTATAAGCGCCTTACCGCGTTTATCCTTAGCCATGCT- 31114 ||||| || |||| || ||||| || | ||||||||| ||||| || || | ||| Sbjct 7150 GGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGA-GCTC 7092 Query 31115 GGCATCAATGTTCAACACCTCACACAGCGAGGCCAGTGAGCCAGGGAGGGCGTGGCGGAA 31174 | || ||| | ||| || || || | || || || || | |||| ||| | Sbjct 7091 CACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTA 7032 Query 31175 CGCAACTATCATAGTGTCGATGATGTTTTCTACGAGAAGCTCGAACCCCCAGCAATGCTT 31234 || | | ||| ||||||||||||| || | | | ||| ||||| || | | Sbjct 7031 GGCCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCCCAACAGTTCGA 6972 Query 31235 AATAACGAGGCGGTCGAACATAAGGAAGTTTTGGCCTACCA 31275 | || | | ||||||||| | |||||||||||| |||| Sbjct 6971 CAGCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135884061062568