Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq139046 390 4e-104 >seq139046 Length=22897 Score = 390 bits (432), Expect = 4e-104 Identities = 949/1416 (67%), Gaps = 30/1416 (2%) Strand=Plus/Minus Query 778 GCTCGAGCCGTGGCAGCTGTTCGGCTTGGCTTGCACGTTCGGCTGGGTTAGGAAGAAGAC 837 |||||| ||||||||| ||||| |||| | | ||| ||| | | || | | Sbjct 22363 GCTCGAACCGTGGCAGTCTTTCGGTTTGGGGATGATTTACGGGTGGTTGCGCAAAGGGTC 22304 Query 838 GGGATTTCGGCGCTTTCGCGAGTCGTACTGGGAGGTGCCGCGCAAGAACGGCAAAAGCGT 897 || | ||| || ||||| ||| |||| | || || || || || ||||| || || Sbjct 22303 AGGCTATCGTCGTTTTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGT 22244 Query 898 GATCGCCGCGGGCGTCGGGATTGCGATGTTTACCGCCGACGACGAATTCGGCGCCGAGGT 957 | ||||| || | || |||||||||| |||||| ||| ||||||||||| || Sbjct 22243 TCTGGCCGCCGGGATAGGCGTTGCGATGTTCGTCGCCGATCGCGAGTTCGGCGCCGAAGT 22184 Query 958 GTATTGCGGCGCGACGACCGAGCGGCAGGCTTGGGAAGTCTTTCGGCCGGCGCGGCTGAT 1017 || | ||||| ||||| || ||||| ||| || || || ||||| | | || Sbjct 22183 ATACTCAGGCGCAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCAT 22124 Query 1018 GGT---GAAGCGCTCGCCGCTGCTCATCGAACA--CCTC-GGCATTGAGGTTAACGCACA 1071 | | ||| || | |||| |||| || | || ||| |||| || || || Sbjct 22123 GATACAGAAAAGCCCAGAACTGC------AACAAGCCGCAGGTATTCAGGTGAATGCCCA 22070 Query 1072 GGCGTTGAATCGGCCCGAAGACGGTAGCCGCTTCGAGCCAATCATCGGCAATCCGGGCGA 1131 | ||| |||| | || ||| || || || || | ||| |||| || || Sbjct 22069 AACTTTGGCCGTCCCCGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGA 22010 Query 1132 TGGCGCGTCGCCGTCCTGCGCGATCGAGGACGAGTATCACGAGCACGATACGAACGCGCA 1191 ||| || || ||||||||||| || || | |||||| ||| | || || | Sbjct 22009 TGGTGCAAGCCCCTCCTGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACT 21950 Query 1192 GTACGAAACCATGCTCACGGGGATGGGCGCGCGCCGGCAGCCGTTGATGTTCGTCATCAC 1251 ||| || || |||||||| || |||||||| |||||||||||||| | ||| ||||||| Sbjct 21949 GTATGACACTATGCTCACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCAC 21890 Query 1252 GACGGC-GGGCGCCAACATTGAAGGGCCGTGCTACGACAAGCGCCGGCAGGTGATCGAAA 1310 |||||| ||| || | |||| || ||||||||| |||||| | | |||| Sbjct 21889 GACGGCAGGGTACCTGC-TTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAA 21831 Query 1311 TGCTCGAAGGGACGGTGCCCGACGACGAGCTTTTCGGGTGGATCTGGACCATCGACGAAG 1370 ||||||| ||| ||||| || || |||||||| | | || ||| | | || || | Sbjct 21830 TGCTCGACCAGACTGTGCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGG 21771 Query 1371 ACGACGATTGGACCGATCCGCGCG-TGCTCGCGAAAGCCAACCCGAACATCGGCATCTCG 1429 | || |||||||| |||||| ||| | || ||||| |||||||| ||||| | || Sbjct 21770 AGGATGATTGGACAGATCCG-GCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCC 21712 Query 1430 GTCTATCAGGAGTATCTGGAGAGCCAGC-AGCAACGCGCGATCAAGTCGGCACGGTTCAC 1488 || | | || | ||| |||||||||| || | | || | || | || | ||| | Sbjct 21711 GTATTCCGAGATTTTCTTGAGAGCCAGCTCGCTAAG-GCTGTAAATCAGCCAAGATTCGC 21653 Query 1489 GAACACGTTCAAGACGAAACACCTGAACGTGTGGACGTCGGCGAAGGCGGGCTATTTCAA 1548 |||||||| || || || ||||| |||||| | | || || |||| |||||| Sbjct 21652 CGGAACGTTCAAAACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAA 21593 Query 1549 CCTCGAAGACTGGAAGGCGTGCGAGGACCGATCGTTGTCGCTCGAGCAGTTCGA-GGGAC 1607 | | | ||||||| |||||| || | || || || | || || ||| | || | Sbjct 21592 CATGGTTAACTGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAA 21533 Query 1608 AGGACTGCGTGCTGGCGCTGGACATGGCGCGCAAGCTAGACTTGAACAGCATGGCGCGGC 1667 | | | | ||| || ||| | ||||| ||||||||| ||||||||||||| |||| Sbjct 21532 CGAAGTTAATTTAGGC-CTTGACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGC 21474 Query 1668 TTTTCTGGCGCGATATCGACGGGCGGCGGCATTACTTCTGCGTGGCGCCTCGATTCTGGG 1727 | |||||||||||||||||||| || ||||||| | | | |||| || ||||||| Sbjct 21473 TGTTCTGGCGCGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGG 21414 Query 1728 TGCCGGAAGACACCGTGCGCAATACCGAAAACCGTCGTATGGCCGAGCGCTATCAGGCGT 1787 |||| | ||||| | | || || || |||||||| |||||| |||| | | Sbjct 21413 CGCCGTATGACACGATATACGATGTGGATAATAAGCGTATGGCTGAGCGCCTTCAGACTT 21354 Query 1788 GGGTCAACCACGGCT-TCCTGATCGAAACGGATGGCGCGGAGATCGACTATCGCGAGATT 1846 || | || | || || | || || ||||| || | |||||||| | ||| Sbjct 21353 GGCTTGCAGGTGGATATCTCGAGAG-CACAGACGGCGCTGAAGTTGACTATCGGGCTATT 21295 Query 1847 CTGGAAGAAGCCAAGGAAGCCAAC-CGGCGGTGCCCG-GTTCAATGCACGCCGCTCGATC 1904 |||| | ||| ||| | ||| ||| || | | ||||| || | || | Sbjct 21294 CTGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGTGGCGCATGCA--GCGATAGACC 21237 Query 1905 CGCATGGTGCGACGAACCTGTCGCACCAGCTCGCGGACGAGGGCCTGACGCCGGTCACGA 1964 | || || || ||| ||| ||| | ||||||||| | ||||| ||||| | Sbjct 21236 CTAGCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTA 21177 Query 1965 TCGTGCAGAACTACACGAACATGTCGGACCCGATGAAGGAGCTCGAAGCAGCGATCACGT 2024 || | || |||| | | ||||| ||||| |||||||| ||||||||||| || Sbjct 21176 TCATTCAAAACTTTCAGCATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAG 21117 Query 2025 CACGACGGTTCCATCACGACGGTAATCCGATCATGACGTGGTGTATCAGCAACGTGATCG 2084 | | || |||||||||||||| || ||||||||||| | ||||||||||| ||||||| Sbjct 21116 CCGGTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCG 21057 Query 2085 GCAAGAACCTGCCCGGCAACGACGACGTGGTACGTCCGGTCAAGCAG--GGCAACGACAA 2142 | || |||| || || || ||||| || || | || || ||| || ||| |||||| Sbjct 21056 GTAAATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGC--CGACAA 20999 Query 2143 CAAAATCGACGGCGCCGTGGCGCTCATCATGGCGGT 2178 |||||| ||||| ||||| || | || ||||| || Sbjct 20998 CAAAATAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155378219632272