Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq130785 149 2e-31 seq104767 111 5e-20 seq28727 86.0 2e-12 >seq130785 Length=1492 Score = 149 bits (164), Expect = 2e-31 Identities = 175/233 (75%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 4271 GCGGTGTATTCCGGACCAGTGATGCCGTGGATTGACCCTGTTAAGGAGGCTGAGGCCTGG 4330 || ||||| ||| || || ||||||||||||||||| | || |||||| | | ||| Sbjct 1072 GCCGTGTACAGCGGCCCTGTTATGCCGTGGATTGACCCGCTAAAAGAGGCTAACTCATGG 1013 Query 4331 AAAATCCAGATTCGTGGTGGAGCGGCGACAGAATCAGACTGGGTACGTGCAGGTGGTCGT 4390 | | | || || || || ||||||||| |||||| | || ||| | ||| Sbjct 1012 CGCGTGCTACTGCGCGGCGGTGCAGCGACAGAAGGGGACTGGATCCGCGCACGCGGTGCG 953 Query 4391 AATCCGGATGATGTCAAACGTCGGCGCAAGGCCGAAATTGATGAAAACCGCAAGCTGGAT 4450 ||||||| ||||| |||||||| |||||||| ||| ||||||||||| | ||||||||| Sbjct 952 AATCCGGGGGATGTTAAACGTCGCCGCAAGGCGGAAGTTGATGAAAACAGAAAGCTGGAT 893 Query 4451 CTGGTATTTGATACCGATCCGGCCAGTGATAAAGGAGGCAG-CAGTGCCGCAA 4502 |||| || || || || ||||| | ||||||||| ||||| ||||| ||||| Sbjct 892 TTGGTGTTCGACACGGACCCGGCAAATGATAAAGG-GGCAGCCAGTG-CGCAA 842 Score = 149 bits (164), Expect = 2e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 3933 AGCCAGGCATTATTTACGACGATCTGAAACCCGGCGAAGAAATCGGAATGGTGAAGTCGG 3992 |||| ||||| | || |||||| | || || ||||| ||||| ||| | || || | Sbjct 1458 AGCCCGGCATGCTCTATGACGATTTATTGCCGGGTGAAGACATCGGGATGATCAAATCTG 1399 Query 3993 ATCGTCCCAATCCTAACCTTGAAACTTTTCGTAATGGTCAGTTGCGTGCCGTGGCGGCGG 4052 | || || || | ||||||||| || ||||| || || ||| | || ||||| || |||| Sbjct 1398 ACCGACCTAACCATAACCTTGAGACGTTTCGAAACGGCCAGCTTCGCGCCGTAGCCGCGG 1339 Query 4053 GCAGTCGTCTGAGTTTTTCCAGTACGGCACGCAACTATAACGGCACTTACAGCGCCCAGC 4112 ||||||| |||||| |||| | | |||||||||||||| ||||||||| | |||| Sbjct 1338 GCAGTCGGGGCAGTTTTCCCAGCATTTCCCGCAACTATAACGGAACTTACAGCTCTCAGC 1279 Query 4113 GTCAGGAACTGGTTGAGTCTACTGATGGCTACCTGATCCTGCAGGACTGGTTTAT 4167 | ||||| ||||| ||| | ||| |||||| || |||||||| |||||| Sbjct 1278 GACAGGAGCTGGTGGAGGCATTTGAAGGCTACAGCATACTGCAGGATGCGTTTAT 1224 >seq104767 Length=4578 Score = 111 bits (122), Expect = 5e-20 Identities = 289/426 (68%), Gaps = 20/426 (5%) Strand=Plus/Minus Query 1540 GATCCCTTTAAAGCCAGTGAGGCGGCGTATCTACTTTGCCCGCACTG-CAGCGGCATTAT 1598 || ||| ||| ||||||||| |||| || | |||||||| || ||| | | || Sbjct 1480 GACCCCGTTATCGCCAGTGAGTCGGCCTACATTGAGTGCCCGCATTGTCAG-GAAAAAAT 1422 Query 1599 CACTGCGGAGA-AAAAGCGTGAGCTCAATAGTGCAGGAGTCTGGTTGCGTGAAGGTCAGG 1657 || ||| || ||||||| | || |||| ||||||||| |||||||||| || Sbjct 1421 CA-TGCCCAGCGAAAAGCGCGCACTGAATATAAAGGGAGTCTGGCTGCGTGAAGGGGAGC 1363 Query 1658 TCATTGAT--CGTAACGGCAACGTTT---CCGGTGAACCGCGCCGCTCCCGTATCGCCAG 1712 ||| || || ||| || || |||| | | | ||||| || || || ||| Sbjct 1362 GAATTAATTCCG---CGGGAA--TTAAGACCGGGGTAGCACGCCGTTCGCGCATTGCCTC 1308 Query 1713 TTTCTGGATGGAAGGGCCAGCTGCTGCGTATCAGACCTGGGCGCAACTGGTTTACAAATT 1772 |||||||||||||| ||||| || || ||||| || | || | ||||| || || Sbjct 1307 GTTCTGGATGGAAGGCCCAGCCGCCGCCTATCAAACGCTTTCTCAGTTAGTTTATAAGTT 1248 Query 1773 ACTGACTGCAGAACAGGAGTATG-AAGCGACAGGAAGCGAAGAAACACTCAGGGCGGTTA 1831 ||| |||| | ||||| |||| | | || || ||||| ||||| || | |||||| | Sbjct 1247 GCTGTCTGCCCAGCAGGATTATGCTATCAAC-GGCAGCGAGGAAACGCTGAAGGCGGTCA 1189 Query 1832 TCAATACCGACTGGGGATTACCTTATCTTCCCCGCGCCAGCATGGAGCAACGAAAAAGTG 1891 ||| || |||||||| | || ||| |||| | ||||| |||| || || ||| | Sbjct 1188 CCAACACTGACTGGGGTCTGCCGTATTTTCCTCAATCCAGCCTGGAACAGCGCAAATCAG 1129 Query 1892 AACTGCT--TGAGCAGCGGGCAGAGCCAGTTCCTTCCCGCAGTGTGCCGGATGGCGTTAA 1949 || || || ||| || ||||||| || || ||| |||| || || ||||| Sbjct 1128 AAACACTGATG-GCA-CGTTCAGAGCCGGTGACTAAGCGCCGTGTACCCGACGGCGTGCG 1071 Query 1950 TTTCCT 1955 |||||| Sbjct 1070 TTTCCT 1065 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1180 CTTAAAATTGGTTGGCCCTCGGTCAACATTATGTCGTCGTCGGATTACCGGTTTGTCGCC 1239 || ||||| || ||||| ||| | || |||||||| ||||| || || | || || Sbjct 1869 CTGAAAATCGGCTGGCCATCGATAAATATTATGTCCTCGTCTGACTATAAATGCGTAGCG 1810 Query 1240 TTAACCGATTACGACCGTTTTCCGGAGAATATCGACAGCGAGGGTGATGGTTTCTCCCTG 1299 |||| || || ||||| || || || |||||||| |||| || || || ||| | ||| Sbjct 1809 CTAACTGACTATGACCGCTTCCCTGAAGATATCGACGGCGAAGGGGACGGGTTCACGCTG 1750 Query 1300 GCCTCAAAACGTACCACCACATTTATGTCCGCCGGGATGAC 1340 | || || |||||||| || ||||||||||| || ||||| Sbjct 1749 GGGTCGAAGCGTACCACGACGTTTATGTCCGCTGGCATGAC 1709 Score = 96.9 bits (106), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 2317 GGCGACAGCATCCGGCGCGCA--AAACTGATCACCCGTACATTCCCTGATAACACCGGAC 2374 || ||||||| || |||||| ||| |||| || || | || |||||||||| Sbjct 619 GGAGACAGCA--CGACGCGCAGTAAATTGATAACTAAAACCCTGCCAGATAACACCGACA 562 Query 2375 GAACGGGCCGACGGGCGCAGGCCGCAGGTGATGTGCCGCTCTGGCTTCTTCAGACGGATG 2434 || || ||| || || |||| ||| |||||||| | | ||| | || || ||| Sbjct 561 GACCGAACCGTCGCGCCGAGGCGCGAGGCGATGTGCCTTTATATCTTTTGCAAACCAATG 502 Query 2435 CCCTGAAAGACCGGGTGAATAACGCGTTATGGCGTGACTCGCCAGGTCCCGGCTATGTGC 2494 | || ||||||||| | | ||||||| | || || ||| || | |||||||| Sbjct 501 CACTCAAAGACCGGATCAGTAACGCGCTCGAACGCGAAACGCTGGGCGCTAACTATGTGC 442 Query 2495 ATTTCCCTGACTGGCTGGG-GAGCTGGTTTTACGACGAACTGACGTATGAAGA 2546 |||| || ||||||||||| ||| ||||| || |||||| |||| || ||||| Sbjct 441 ATTTTCCAGACTGGCTGGGAGAG-TGGTTCTATGACGAATTGACCTACGAAGA 390 >seq28727 Length=1947 Score = 86.0 bits (94), Expect = 2e-12 Identities = 168/248 (68%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 32644 GCGCTGAAAGTACCAATGAAGGTTTCTACTTTGCTGTCTTTGAATTTCTCAACAAGCAGA 32703 ||| ||||| ||||||||||||||| |||| | | | || ||||| | |||||| Sbjct 1 GCGGTGAAATCACCAATGAAGGTTTCAACTTCAACGCCGGTAAAGTTCTCTTCCAGCAGA 60 Query 32704 TCACGAAATTCGTTAGCCATTTCTTCCTGCACCGCTTCCAGCTGAATAATGCGCAGAACC 32763 | | || ||| ||||| |||| | | | ||||| ||||| ||| ||||| ||| Sbjct 61 GCCTGGAACTCGACGGCCATAGCTTCTTCTGCTGTTTCCAACTGAACAATACGCAGCACC 120 Query 32764 AGTACAGGACGAT---CGCCAGTGATAATGCTGAGGCGTAATTTAAACGGACGTTCTTTC 32820 | || || || |||| || | |||||| || | | || | ||||| | Sbjct 121 AAGACCGGTACATCGCCGCCGGTCAGGATGCTGTAACGGAGTCGGAAGCGGCGTTCGGCC 180 Query 32821 AGGCCTTCAAACGGAACGCATTTAAATTCAAATGCCACTGGCATAATGTCTTTGGTTTTC 32880 | |||||| |||| |||||| ||| || |||||| | |||||| |||||| | || Sbjct 181 AACCCTTCATACGGCACGCATGCAAACTCGAATGCCGCAGGCATAGCCTCTTTGCTCTTG 240 Query 32881 GCTTCGAC 32888 || ||||| Sbjct 241 GCCTCGAC 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150097353667716