Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq14905 251 3e-62 >seq14905 Length=119551 Score = 251 bits (278), Expect = 3e-62 Identities = 695/1045 (67%), Gaps = 34/1045 (3%) Strand=Plus/Plus Query 59849 GCACAAGTTGGAGCTCTTAATGCGACCAATGTTAGGGGCTGGATTGCCTCGGTTAGCTGC 59908 ||||| |||| | || ||||| || || ||||| ||| | ||||| | | Sbjct 8530 GCACAGGTTGCTCATGTTGATGCGGCCCTTGATAGGG------TTGGCGCGGTTCACCGT 8583 Query 59909 ATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAA 59968 ||| |||||||| | ||||| ||||| || |||||||||| ||| || | |||||| Sbjct 8584 ATCCTCGAACATCATATAAGGGTAGCCGGATTCAAACTGAATCTCAGCCAACACCTGGAA 8643 Query 59969 CAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCG-T 60027 | || || |||| ||| ||| ||| ||| | | || || | ||| | || | Sbjct 8644 GAACTCGCGGGCGTTGATTTTGGTTTTATGGATGCGCTTGTCGTTGA-CCATTTCGCGAT 8702 Query 60028 ACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAG 60087 || ||||| | | | || || |||| | | ||||| ||||| | || || ||| | Sbjct 8703 ACTTCTCGCTGATGCTGATTTCAGACATCGGCACACCGTAAACCTTCTCGACGTGATACG 8762 Query 60088 GAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGA 60147 | ||||| || ||| ||| | | || || || ||| |||| ||| |||| | Sbjct 8763 GCGAGAACAGATACATGTCTTCGTTGTTTTTCGCCAGCTCGAAGGTGATATCCGGAATAA 8822 Query 60148 TAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTAT 60207 || || || || || || || || ||||||||||||||||||||||| |||||||| | Sbjct 8823 CCACGCCGAGAGACAGCGTTTTTATGCGGATCTTCTCGTCGGCGTTTTCGCGCTTGGTGT 8882 Query 60208 CCAGG-AACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGC 60266 | ||| ||||| || ||||| |||||||| ||||| | ||| ||||| || || ||||| Sbjct 8883 CGAGGAAACGC-AGAATGTCCGGGTGGTGCGCGTTGAGATAGACCGCGCCGGCCCCCTGG 8941 Query 60267 CTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATG 60326 | ||||||||| || || | ||||||||| ||||| || |||||||| | ||||| Sbjct 8942 CGTGCACCCAGCTGATTTGCATAGGAGAAGGCGTCTTCCAGCATCTTCATAATCGGGATC 9001 Query 60327 ACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGG-- 60384 || || || | |||| ||| || ||| || || || || |||| |||| ||||| Sbjct 9002 ACCCCCGATGACTGATTTTCGATACGCTTGATAGGCGCACCGACCTCACGGATGTTGGTC 9061 Query 60385 AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG---AGAGTCCTGAACGA 60441 || || || | | || || || || || || |||||||| || ||||| | | ||| Sbjct 9062 AGCAT--AAAGGCCACGCCACCGCCGCGTTTTGACAGCTGCAGGGCAGAGT--TTACCGA 9117 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || || || ||| ||||| |||| | | | || | |||||| || || | || Sbjct 9118 -GCGGCCAATCGACTCCATGTTGTCTTCGATACGCAGCAGGAAGCACGAGACCAG-TTCA 9175 Query 60502 CTGCGTCGAGAAGCCCCGC-GTTGAGGAAGGTCGGAGTTGCAGGCTGGAAGATTCCCTTG 60560 | ||| | |||| ||| ||||||||||| || ||||||||||| || || Sbjct 9176 CCGCGCTGTTTCTTGCCGCAGTTAAGGAAGGTCGGTGTCGCAGGCTGGAAACGGCCGCTG 9235 Query 60561 ATAATGAGATCCACAAG-GGACTCAGCGTGCTCGAAGTCTTC--GCTGTAGTG-GATGGC 60616 || || || || || | || ||| ||| || || | || || | ||||| Sbjct 9236 ATGATTTCGTCGACCAGATGGCT-GGCGAGCTTGATATCACCCTGCGCCAGCGTCATGGC 9294 Query 60617 CGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCCATCGTTAGTCTTCAA 60676 || || || ||||||||||| || ||||||||||| || || |||| Sbjct 9295 GACCAGACAAACGCGGTCTTCGTAGCGTTCAAGGTAGCGCTTGCCGTCAAAGGTTTTCAG 9354 Query 60677 GGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAAGCGGAACTTGTGTCC 60736 | |||| | | || |||| | || |||| | | |||| ||||||||| || | | Sbjct 9355 CGTGTAGCTGGTGTAATACTTGAATGCGCCCAGGAAAGTCTGGAAGCGGAATTTTTTAGC 9414 Query 60737 GTAGGCCTGTTTCATGAGTCTCTTTAGGTC--CTCGAAGCCGTAGCGAAGGACGACATCC 60794 ||| |||||||| | || | ||| |||| || ||| |||| || || ||| || Sbjct 9415 GTAAGCCTGTTTAAACAGACGCTT--GGTCGATTCAAAGTCGTATTGATCGAGGACTTCA 9472 Query 60795 TTGTCCCATAGTTGGACTTCCTCTGTGAGGTGATCCACCTTCTCCTCTAGGGAGTGAAAG 60854 ||| | | | |||| || || | | || ||||||| | || ||| ||| Sbjct 9473 GCGTCGTA---ATAGCCTTCTTCGACCAGATAACGCAGCTTCTCCGCCAGATTGTGGAAG 9529 Query 60855 AATACGGTGTTCTTGTTGACGTGCT 60879 || || ||||||| || || |||| Sbjct 9530 AACACCGTGTTCTGATTCACATGCT 9554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225345476111240