Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq2788 179 4e-40 seq2551 131 2e-25 seq38357 84.2 2e-11 seq14905 82.4 8e-11 >seq2788 Length=136445 Score = 179 bits (198), Expect = 4e-40 Identities = 322/465 (69%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 135748 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135807 || || |||||||| |||| | | ||||| | |||| |||||| || || ||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 135808 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135867 || ||||||||||| | || |||| |||||| |||| || || ||||| || | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 135868 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135927 || | ||| ||||||| || | |||||||| ||||| | || ||||| || ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 135928 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135987 || | ||||| || ||||| || ||||| || ||||| || || || |||| |||||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 135988 ACGCCAGTATGACGAA--CTTCACCATGCC-CG-ATCTTAGATCCTTCCGCGCGAATCAT 136043 ||| ||||| ||| ||||||| ||| || ||| || ||| || || Sbjct 19460 CAGCCGGTATG--GAATGCTTCACC--GCCGCGAATCGGGCTACCCAGCGCACGGATGCG 19515 Query 136044 GCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGT 136103 |||||||||||| |||||||| || |||| || || || | ||| || | | || Sbjct 19516 GCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGT 19575 Query 136104 TTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAAATTGGCG 136163 |||||||| | || ||| | | || |||| || || || || || ||||| Sbjct 19576 CGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCG 19635 Query 136164 TGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGAT 136208 || ||||| ||||| || | |||||| || ||||||||||| || Sbjct 19636 AGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAAT 19680 >seq2551 Length=53185 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 53318 TTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACT 53377 ||| || | || ||||||||||| | || ||||| ||||||| ||| || || Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 53378 ATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATG 53437 |||||||| ||||| || || |||||||| || || ||||| ||| | |||||||||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 53438 TTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACC 53497 ||| | || ||||||| ||| || || || ||||||||| |||| ||||||||| || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 53498 TTCGA 53502 ||||| Sbjct 36936 TTCGA 36932 >seq38357 Length=36386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 197/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 35215 ACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGGATCTTCCGGGTT 35274 |||||| || | |||||| | || || || || ||||| || || | || ||| || Sbjct 27857 ACGCTTGCTGGCACATTCGAGGGCGAGCTGTTTGATGTCATAATTGGCGTCGGCCGCCTT 27798 Query 35275 AAGGTTTAATCCTTCTTCTAAGAACATCACCAGCTTAGGAAACACCGGAGTTATACCATC 35334 | | |||| || || | | | ||||| || |||||||| | ||| ||| || Sbjct 27797 ATGATTTATGCCGTCGCGAATGGCGAAAACCAGTTTGGGAAACACGGCCGTTTTACGATT 27738 Query 35335 TTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAGTTTTTCTTCCCA 35394 ||| ||||| || | || ||| |||| ||| |||||||| ||| ||| Sbjct 27737 TTTTCCTAATCCGGCGATACGGTTGCGCAGAATCGATTTTTGAATCAGCCGCGCTTGCCA 27678 Query 35395 GCTAGTACCCATACCAAATGTTAAAGTCACAAAAGGCGTTTGACCGTTGGTGGAGAACAA 35454 | ||||||| |||||| || |||||||| ||||| || ||||||| || | | Sbjct 27677 ACAGGTACCCAGACCAAAGCCAAAGGTCACAAACGGCGTCTGGCCGTTGGCGGTGTGAAG 27618 Query 35455 AGTGTTGATTTCATATTCCAACGCTTGATACCCGTC-TAGCGTTTCTTTTTCTGT 35508 || || | |||||||||| || ||| | |||| |||| | |||||||||| Sbjct 27617 CGTATTAACCTCATATTCCAGCGACTGAAAGGCGTCGTAGCACT-CTTTTTCTGT 27564 >seq14905 Length=119551 Score = 82.4 bits (90), Expect = 8e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 53389 || || ||||| | ||| ||||| ||||||| || || |||| || | || || ||||| Sbjct 42446 GTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCA-ACGAGTTAAAACGCAC 42388 Query 53390 CGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 53449 ||||| || || || || || || | ||| || |||||||||||||||| | || || Sbjct 42387 GGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATGTTTTATCGCATC 42328 Query 53450 CAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 | | | || || || |||||||| || | |||||| || ||||| || Sbjct 42327 TTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCCTTCTAC 42274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524622579016800