Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq119770 149 1e-30 seq123102 109 1e-18 seq88566 105 2e-17 >seq119770 Length=1537 Score = 149 bits (164), Expect = 1e-30 Identities = 183/249 (73%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 288229 ATGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTT 288288 |||||| |||| || ||||| || || | | ||| || |||| || ||||||| Sbjct 849 ATGATGGTTCAATAATA-CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTT 907 Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||||| || || ||||| ||||||||||||||||| ||||| || ||| Sbjct 908 TGAATATTGTAGTCGGATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGA 967 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || |||||| ||| || |||||||||||||| || || ||||| || ||||| || Sbjct 968 CGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATG 1027 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | ||||| ||||| || || || || |||||||| || Sbjct 1028 GTGTCAGATGGCTCCACCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATT 1087 Query 288469 TGCATTATG 288477 |||||| || Sbjct 1088 TGCATTTTG 1096 >seq123102 Length=1410 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||| |||| | |||||||| || ||||| ||||| || ||||| Sbjct 853 TTCCTTCTGAATATTATAATCGGACAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAA 912 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| |||||||||||||||||| || ||||| ||||| || || Sbjct 913 AATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 972 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||| || | ||| | || || || | ||||| || || || |||| Sbjct 973 TTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCA 1022 >seq88566 Length=1870 Score = 105 bits (116), Expect = 2e-17 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| | ||| | ||| ||| ||||| || ||||| || | | || ||||||||||| Sbjct 247 TACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCTTC 306 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383 | ||||| || || || || | ||| || ||| ||| |||||||| ||||| || Sbjct 307 CAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTG 366 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 || || ||||| || | ||| |||| |||| | ||| || || || ||||| || || Sbjct 367 AATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTT 426 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || |||||||| |||||| Sbjct 427 ACCCGTAAGGGTTTTAACGAATATTTGCATT 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177552813983188