Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq2788 369 1e-97 >seq2788 Length=136445 Score = 369 bits (408), Expect = 1e-97 Identities = 750/1104 (68%), Gaps = 26/1104 (2%) Strand=Plus/Minus Query 51854 GTAATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTC 51913 || ||||| || || ||||||||||||| ||| || |||| | || ||||| |||||| Sbjct 17892 GTTATGGCATATACCACCTTTTCACAAAACAAAAACGACCAGCTGCTCGAGCCGATGTTC 17833 Query 51914 TTTGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAG 51973 || |||||| |||||||| || || | ||||| ||||| || | || ||||| || Sbjct 17832 TTCGGTCAGTCGGTTAACGTGGCGCGCTTCGACCAGCAGAAATATGAAATCTTCGAAAAA 17773 Query 51974 TTAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGAC 52033 | || || || || |||| ||||||||||| |||||||| || |||||| ||| ||| Sbjct 17772 CTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCGGAAGAAGTTGACGTTGCCCGTGAC 17713 Query 52034 CGTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGT 52093 ||||| || | ||| || || | | ||| ||||||||||| || || || Sbjct 17712 CGTATCGACTTCCAGGGTCTGCCGGAGCATGAAAAACACATTTTCCTGAGCAACCTGAAG 17653 Query 52094 TATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATC 52153 ||||||| || || ||||| |||||||| ||| | || ||| | | || || | Sbjct 17652 TATCAGACGCTGCTGGACTCGATTCAGGGCCGTAGCCCTAACGTGGCGCTACTGCCGCTG 17593 Query 52154 GTGAGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCAT 52213 | |||||| || | ||||| ||| |||| |||||| | |||||||||||||| || Sbjct 17592 ATCTCCATTCCAGAGCTTGAGACCTGGGTTGAGACCTGGGCGTTCTCCGAGACTATCCAC 17533 Query 52214 TCACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGAT 52273 ||||| || || || || || ||||||||||| || | || || | | ||||| Sbjct 17532 TCACGCTCGTACACGCATATTATTCGTAATATCGTCAACGATCCGTCACTGGTGTTTGAC 17473 Query 52274 GAAATCGTAACTAACGAACA---CATCAAGGCACGAGCAATTGGCATCTCCCAATATTAT 52330 || ||||| || |||||| | | ||||| || || | | |||||| || || Sbjct 17472 GATATCGTCACCAACGAAGAGATCCTCAAG---CGTGCGAAGGACATCTCTGGTTACTAC 17416 Query 52331 GACGAACTCCAGCAACTCA-CTGC-ATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTG 52388 ||| || | | | | || | ||| || || | || ||||| | ||| | | Sbjct 17415 GACTCGCTGATCGAGATGACCAGCTACTAT--CACCTGCTGGGTGAAGGTACGCAT-CAG 17359 Query 52389 GTC-ATG--AAA----------TTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGC 52435 ||| ||| ||| | | |||| ||| |||||||||| || ||| | ||| Sbjct 17358 GTCAATGGCAAAACGGTTGTGGTGAACCTGCACGAGCTGAAGAAGAAACTCTATCTGTGC 17299 Query 52436 CTCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTT 52495 || ||| ||||||| ||||||| | || ||||| |||||||| || || |||||| Sbjct 17298 CTGATGAGCGTCAATGCGCTGGAAGCCGTGCGTTTCTACGTCAGCTTCGCCTGTTCATTT 17239 Query 52496 GCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTAT-TCGCTTAATTGCACG 52554 |||||||||||||| || | |||||||| ||||| || || || |||| || || || Sbjct 17238 GCCTTCGCAGAACGCGAGCTGATGGAAGGTAATGCAAAAATCATCAAGCTT-ATCGCCCG 17180 Query 52555 AGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAA 52614 || ||||| || || |||| || ||||||||| ||||||||| || || Sbjct 17179 CGACGAAGCGCTCCACCTGACCGGGACTCAGCACGCGCTGAACCTGCTGCGCTCCGGTGC 17120 Query 52615 AGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTT 52674 |||||||| ||||||| || || || ||| |||| || | | |||| Sbjct 17119 CGATGACCCGGAAATGGCCATCATCGCCAAAGAGTGCGAGAAAGAGTGTTATGACCTGTT 17060 Query 52675 CGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTAT 52734 || || || | |||||||| || ||||| || ||| | ||| || ||||| || Sbjct 17059 CGTGCTGGCCGCAGAGCAAGAGAAAGACTGGGCAGAATATCTTTTCCGCGACGGCTCGAT 17000 Query 52735 GATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTAT 52794 ||| ||| | ||||| | ||||| ||| || | ||||| ||||| || || ||||| Sbjct 16999 GATCGGCCTGAACAAAGACATTCTTTGCCAGTACATCGAATACATCACCAACATCCGTAT 16940 Query 52795 GCAAGCAGTTGGATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAA 52854 ||| || || || | ||| || ||||| | | |||||||| || ||||| || Sbjct 16939 GCAGGCCGTGGGTCTGACTGCACCGTTCAAGACTCGCTCAAACCCGATCCCATGGATCAA 16880 Query 52855 TGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTA 52914 || ||| || || || ||||||||||| || |||||| || | || || || Sbjct 16879 CGCGTGGCTGGTGTCTGACAACGTACAGGTTGCGCCGCAGGAAGTTGAAGTGAGCTCTTA 16820 Query 52915 CCTGGTCGGGCAAATTGACTCCGA 52938 ||||| || || || || || || Sbjct 16819 TCTGGTGGGTCAGATCGATTCTGA 16796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169118694232124