Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq43481 221 5e-53 seq54952 116 1e-21 seq6040 109 2e-19 >seq43481 Length=83004 Score = 221 bits (244), Expect = 5e-53 Identities = 223/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 12560 GCTGAAGCCAAACAACATCAACGTTTAGAAATTTCGCAAGCGCATTCATTTTTTCCTGAC 12619 |||| ||||| || ||||| || ||||| || || ||| | ||| | | | Sbjct 68217 GCTGCAGCCAGACGGGGTCAACCTTGAGAAACTTGGCCAGCTCTGCCATGACGGCAGGGC 68276 Query 12620 GCGGTAAAGACTCAGCATTAAACCATTTGCTAACGCCTTTGGACGAAAGAGAAAGGGCAC 12679 |||| || || || || || ||||| ||||| |||||||| || || | | || | Sbjct 68277 GCGGCAACGATTCTGCGTTTAACCACTTGCTCACGCCTTTTGAAGACAAACCTGTCGCGC 68336 Query 12680 GGGCTATAGCCATTCCCCTACCATGTTCATCAAGACCAGCTTCTTTACAGGCTTGCGCTA 12739 ||| || || || || | |||||||||||||| ||||| ||||||||||| ||||| | Sbjct 68337 GGGATAAGGCTATCCCACGTCCATGTTCATCAAGCCCAGCGTCTTTACAGGCCTGCGCCA 68396 Query 12740 GCCGCTGGGCGAATTCTTTGCGCACTTTTTCATTCTGAACCATGAGTACGATACTAAAGC 12799 ||| ||| || ||||||| |||| ||||||| | |||||||||||||||||| |||| | Sbjct 68397 GCCTCTGAGCAAATTCTTCACGCAGTTTTTCAGTTTGAACCATGAGTACGATAGTAAACC 68456 Query 12800 ACTTGCAAAAACTTTCAGTTCAACCATAATACGTACTGAAAGTACGAAAA 12849 ||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 68457 ACTTGCAAAAACTTTCAGTTCAATAATAATATGTACTGAAAGTACGAAAA 68506 >seq54952 Length=1307 Score = 116 bits (128), Expect = 1e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 13689 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 13748 |||||||||| || ||||| || || ||| |||||| |||||||| | ||| | ||| Sbjct 172 ATGAGCATGACCCTAATGGCAAAAGCTATGGGTATAAAAGTTGGCAATTCCCTGCGTAAA 231 Query 13749 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCA 13805 |||||||||| |||||||| |||||||||||||| || || || |||||||||||| Sbjct 232 TTGGTTCTGATCAAACTTGCTGATAACGCCAATGACAAAGGGGAGTGCTGGCCTTCA 288 >seq6040 Length=129903 Score = 109 bits (120), Expect = 2e-19 Identities = 95/114 (83%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 22792 GGATTAGTTACGTACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTCAGT-GGTGAGAGC 22849 ||| |||||| |||||| || ||||||| || |||||| |||||||||| ||| ||||| Sbjct 118243 GGAGTAGTTAACTACCGT-ATAATCCTGCACCGCGGCCCCTTAGCTCAGTTGGTTAGAGC 118301 Query 22850 GAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 22903 ||||||||||||||| |||| ||||||||| ||||| | ||||||||| || Sbjct 118302 ACGCGACTCATAATCGCTTGGTCACTGGTTCAAGTCCAGTAGGGGCCACCAAAT 118355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202395633463336