Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq88566 105 7e-18 seq138766 95.1 1e-14 seq78961 86.0 7e-12 seq123102 82.4 8e-11 seq119770 82.4 8e-11 seq54767 82.4 8e-11 seq32335 82.4 8e-11 >seq88566 Length=1870 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | |||||| || |||||||| || ||||||||||| || |||||| || Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || |||| || ||||| || ||||| || || | || ||||| || | ||| Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| | | ||| | || | ||||| | | || ||| | ||| || Sbjct 350 ATTCCTTCCTTAT-CTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAAC 408 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 || | ||||||||||| ||||| || || || || || |||||||||| Sbjct 409 CTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq138766 Length=1258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || ||||||||||| | || || | | || || |||||||||||||| || Sbjct 831 CTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAA 772 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||| |||||| || | ||| | | ||| || ||| ||||| |||| | Sbjct 771 GATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTTGGCCTTGACATT 712 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || | ||| | ||||| || | || || ||||| |||||||| || ||||| Sbjct 711 CTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTAC 652 Query 42197 AAAGATTTGCATTTTCA 42213 ||||||||||||| || Sbjct 651 GAAGATTTGCATTTCCA 635 >seq78961 Length=1067 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 371 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 430 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 431 TACTATCGAGGATTG 445 >seq123102 Length=1410 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | ||| ||||||||||| |||||||| | | || || | Sbjct 601 ACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCC 660 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | || || ||||| | || | || ||||| Sbjct 661 ATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTT 720 Query 42113 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 | | ||| |||||| || | || || | | || || | ||| || || | |||| Sbjct 721 AT-CTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGA 779 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||||||| || | || || ||||| |||||||| Sbjct 780 TAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 >seq119770 Length=1537 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || |||||| |||| || | ||| || |||||||||||||| || | Sbjct 865 ACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGA 924 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || || || ||||| || || || || || || | ||| Sbjct 925 TAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGG 984 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || || ||| ||| | || | ||||| | | | ||||| | |||| Sbjct 985 AATACCTTCTTTATCC-TGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCA 1043 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | |||||||| ||||| ||||| || || || || ||||||||||| Sbjct 1044 CCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq54767 Length=1803 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1452 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1511 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1512 ATACTATCGAGGA 1524 >seq32335 Length=1939 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 631 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 690 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 691 CTATACTATCGAGGA 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542268655412640