Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq123102 122 9e-23 seq43985 120 3e-22 seq21876 120 3e-22 seq88566 109 5e-19 seq119770 107 2e-18 seq138766 104 2e-17 >seq123102 Length=1410 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||||||||| | | ||||| | || ||||||||| Sbjct 614 TGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATCCTCAAGCTGC 673 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| |||| | || || ||||| || ||||| ||||| || ||||| | |||| Sbjct 674 TTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTATCTTG-AATTTT 732 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| || ||| | ||||| | || ||||| | || | || ||||| || Sbjct 733 TGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTTTGCCAGT 792 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| || || |||||||| Sbjct 793 CAATGTTTTAACAAATATTTGCAT 816 >seq43985 Length=4878 Score = 120 bits (132), Expect = 3e-22 Identities = 267/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 || ||||||| || |||||||| ||| ||| ||||| | |||| ||||| || Sbjct 1758 ACTATTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTACTCTTT 1699 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 | || ||||| || ||||||| || || || ||||| || || ||||| | ||||||| Sbjct 1698 CTATTACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCGATTCAATA 1639 Query 154752 ATTGTGCGAAACA--GACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCAT 154809 || | | || || ||||| | || | |||| | || || || ||||| Sbjct 1638 ATGG--CAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCGCGTCCGTCTTGCTCAT 1581 Query 154810 ATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGT 154869 ||| || | ||||||||| || | | || || ||| |||||||| || Sbjct 1580 ATTTAGTATATAATTTTTCAAATTCATCGCCCCATACCTCATGCAAGCCGGGACACTTGT 1521 Query 154870 CGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCA 154929 |||||||| | ||||| ||| || || || ||||||||||| | ||| || | Sbjct 1520 GTGGACACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGAA 1461 Query 154930 CCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTA 154989 ||| || || || || ||||| | || | | ||||| | ||| | ||| ||||| Sbjct 1460 TCCATAATGCATAAAATAAATCTCTAGCTCTATGCTCTTCTGTGCCAGTATTTTTCTTTA 1401 Query 154990 AATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTA 155028 ||| |||||| ||| |||| || || ||||| || |||| Sbjct 1400 AATCCAAAAATTCAAATATATCTGCATGCCATGGTTCTA 1362 >seq21876 Length=2391 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| ||| ||||| || |||||||||||||| | | ||| || | ||| Sbjct 723 AGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCATCT 664 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||||| | || | |||||||| || || |||||||| || || || Sbjct 663 TCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 604 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || ||| |||| || ||||| | || | || Sbjct 603 TGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGC-TCAACTTCCAGGGTGATAGT 545 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| ||||||||||||||||| |||||||| Sbjct 544 CTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq88566 Length=1870 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | ||| ||||| ||||||||||| ||||| | | || || ||||||| Sbjct 248 ACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCTTCC 307 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| ||||| ||| |||| | || ||||| || || ||||||||||| || ||||| Sbjct 308 AGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTG- 366 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | | || ||||| ||| || | ||||| | || || || | || | ||| || Sbjct 367 AATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTT 426 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || || | ||||| ||||| |||||||||| Sbjct 427 ACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq119770 Length=1537 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || || |||| || |||||||||||||| ||||| || | | || || | ||||| Sbjct 884 ACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATCTTCT 943 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || ||||| |||| || || || || || || ||||| |||||||| || || Sbjct 944 AATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTG- 1002 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | | || ||||| ||| || | || ||| | ||||| |||| || | |||||| Sbjct 1003 AATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGTCTT 1062 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || | ||||| ||||||||||||||||| Sbjct 1063 GCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq138766 Length=1258 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||| || || || ||||| || || |||||||| | Sbjct 867 ACCTCCACGAAGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGA 808 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | || ||||||||||| || ||| | || || | |||||| || || || Sbjct 807 AAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGG 748 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || ||||| || |||||||| ||| ||| ||| || | || | ||||| Sbjct 747 AATCCCCTCTTTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCAC 688 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | |||| || || || || | ||||||||||| |||||||||| Sbjct 687 CTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498776379864240