Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2788 372 1e-98 seq1888 149 2e-31 seq6040 82.4 3e-11 >seq2788 Length=136445 Score = 372 bits (412), Expect = 1e-98 Identities = 487/674 (72%), Gaps = 0/674 (0%) Strand=Plus/Plus Query 11 ACGTGAACCAGGGGTTTCATCTGCGGAACATCAATCAACGCCATCAGTTTGTGTTTATTA 70 ||||| ||||| || |||| ||||| ||| || ||||| | | |||||||||||| Sbjct 135486 ACGTGGACCAGTGGCGTCATGGTCGGAATATCGATTAACGCGTTGATTTTGTGTTTATTG 135545 Query 71 CGATGGGTAAAGAGATAATCAAACAGGCGTGGTTGACGCGTTTTTACCAGTTTCGCCATC 130 ||||| || || || || ||||| || || ||| | ||| ||||| |||||| Sbjct 135546 CGATGTTCAAGCAGGTAGTCGAACAGTCGCGGCTGAGCCTGTTTCACCAGACGCGCCATG 135605 Query 131 GCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTATGTTCAATACCATTC 190 ||||| |||||||| || |||| |||||| ||||||||||| || |||| || || Sbjct 135606 GCAATGGTGGCGTAGACGTCAGACATCGCGTCGTGGGCGTTCTCGTGCTCAACGCCGTTG 135665 Query 191 GCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCATCATTTTCAGGCCAGTTT 250 || ||| | |||||||||||| ||||| || | || || || || || |||||||| Sbjct 135666 GCGCGGGTGAGATGCTCAAGGCGGAAGCTTGGGAACCCTTCCTCGTTCTCCGGCCAGTTA 135725 Query 251 ATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATCCCAGCGCGAG 310 || || || || ||||| ||||||||||| ||||| || || || | ||||||||| || Sbjct 135726 ATGCCGTCGGGACGCAGCGCATAGCAGGCGCGCATTACGTCGAGAAGATCCCAGCGAGAA 135785 Query 311 TTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTACGATAAAAAACGTTGCGT 370 || ||| |||||||| ||||||||||||||||||| ||||| ||||||| || || Sbjct 135786 TTTCCATTTTGCCAGCTATAGGCGTAAGGATCGTAGAAGTTACGGTAAAAAATATTACGG 135845 Query 371 GTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAGAATACAGGTCTTCGGTACGGTA 430 ||||||| || || || || | |||||| || |||| || ||||| || ||| | Sbjct 135846 CTGACTTCATCATCAAAGCGAATATTGTTATAACCCACGATGCAGGTGCCGGGCACGCTG 135905 Query 431 AAAAGCGAGTGAATACGGGCGGCAAATGCGGCTTCGTTTTCTCCTTTCGCCCGAGCTTCC 490 || | || || | |||| ||| |||| ||||| ||||| ||| | || | Sbjct 135906 AAGGCCTGATGGATCTGCGCGGTAAAATCGGCCTCGTTCAGCCCTTTGGCCTGCGCGAGC 135965 Query 491 TGCGGGGTAATACCGGTAATTAATACTGCTCCAGGCTGGGGTAAATAGTCATCCGCGGGC 550 ||||||||||| ||||| || | || ||| ||||||| || | |||||| || | || Sbjct 135966 TGCGGGGTAATGCCGGTGATCATCACCGCTTCAGGCTGCGGCAGATAGTCGTCAGAAGGG 136025 Query 551 TTGCAGTAAAAGACTTCGGGTTCGCCGATGACATTGAATTCGTCATCGGTGCGAATGGCT 610 ||||| | || ||||| |||| | |||||| || | || || || ||| | Sbjct 136026 CGACAGTAGATAACCAGAGGTTCTTCGATAATATTGAAATCAGCGTCAGTACGTATGCCA 136085 Query 611 GCGAACTGTGCAGGGCGATCTAACGCGGGGTGCGTGCCAAAGGTTTCGTAATCGTGAAAG 670 |||||||| |||||||| || | ||| ||||| ||||| || || || || ||||||||| Sbjct 136086 GCGAACTGCGCAGGGCGGTCCAGCGCCGGGTGGGTGCCGAAAGTCTCATAGTCGTGAAAG 136145 Query 671 AGGAAGGTAGGTTG 684 ||| || || || Sbjct 136146 TAGAAAGTGGGCTG 136159 >seq1888 Length=101772 Score = 149 bits (164), Expect = 2e-31 Identities = 435/675 (64%), Gaps = 39/675 (6%) Strand=Plus/Plus Query 60963 CGCAATCCCGCCAGCCTGACAAAGCTGATGACGGGCTATGTCGTGGATCGCGCTATCGAT 61022 ||||| || |||||||||||||| ||||||| || |||||| | || || || | ||| Sbjct 19406 CGCAACCCTGCCAGCCTGACAAAATTGATGACAGGATATGTCATCGACCGTGCGCTGGAT 19465 Query 61023 AGTCATCGCATTACGCCAGACGATATTGTCACCGTGGGGCGCGATGCGTGGGCGAAAGAT 61082 ||| || || || || | || || ||| | || || |||| || Sbjct 19466 CAGCATAAAATCACCATGGATGACGTGGTGACTGTGCCTCAGGAAGCCTGGGTCGCAGGC 19525 Query 61083 AATCCAGTGTTTGTCGGTTCTTCACTGATGTTTTTGAAAGAGGGCGATCGCGTATCGGTA 61142 || |||| | | |||||||||||||||||| | ||| ||||| ||||| | || Sbjct 19526 AACAAAGTGCTGGCCGGTTCTTCACTGATGTTCCTCAAACCTGGCGACCGCGTGACCGTG 19585 Query 61143 CGTGATTTAAGCCGTGGTTTAATTGTGGATTCCGGAAATGACGCTTGTGTTGCACTGGCT 61202 ||| | ||| | || | || | ||||| || || ||||| || || || ||||| Sbjct 19586 CGTAACCTAATTCAGGGCATTATCATCGATTCTGGTAACGACGCCTGCGTGGCCATGGCT 19645 Query 61203 GACTATATTGCCGGTGGGCA--ACGGCAGTTTGTTGAAATGATGAACAACTATGCCGAGA 61260 |||||| |||||||| | || ||| || || |||| ||||||||| | || | | | Sbjct 19646 GACTATGTTGCCGGTAGCCAGGACG-CA-TTCGTTGGCATGATGAACCAGTACGTACAAA 19703 Query 61261 AGCTGCATCTCAAGGATACGCATTTTGAAACAGTGCATGGTCTGGATGCACCAGGTCAGC 61320 | || || | | | || || || || || || ||||||||||| ||||||||| Sbjct 19704 AACTCGGCCTGACTAACTCACACTTCGAGACCGTACACGGTCTGGATGCGCCAGGTCAGT 19763 Query 61321 ATAGCTCGGCTTATGATTTAGCTGTGCTTTCTCGCGCTATCATCCACGGCGAGCCCGAGT 61380 | | | || | || || | ||| |||||| ||||| || ||| ||| ||||| ||| Sbjct 19764 ACACCACGTCATACGACCTTGCTAAGCTTTCGCGCGCGATTATCGGCGGTGAGCCTGAGG 19823 Query 61381 TTTATCATATGTACAGTGAGAAAAGTCTCACCT--------------------------- 61413 ||||||||||| ||||| | || |||| Sbjct 19824 AATATCATATGTATGACGAGAAGACGCTTACCTATGACAACATTACTCAAAAAAAAACTT 19883 Query 61414 -GGAACGGT-------ATCACCCAGCAAAACCGTAACGGGTTATTGTGGGATAAAACCAT 61465 ||| || || || ||| | ||||||||||| | |||||||||||| | Sbjct 19884 AATAACCGTCTTTGNCATTACTCAGAACAACCGTAACGGCCTGCTGTGGGATAAAAATCT 19943 Query 61466 GAATGTTGACGGCCTGAAAACGGGTCATACTTCTGGTGCCGGGTTTAATCTCATTGCTTC 61525 || ||||| || ||||| || ||||| || || || || || | || || || Sbjct 19944 CAACGTTGATGGTCTGAAGACCGGTCACACCGAAACGGCGGGCTTCAACATTATCGCGTC 20003 Query 61526 GGCTGTAGATGGGCAGCGTCGTCTCATTGCAGTGGTAATGGGGGCTGACAGTGCAAAAGG 61585 || ||| || | || ||||| ||||| ||||||||||| | | || |||| || Sbjct 20004 TGCGACAGAAGGCAATCGCCGTCTGATTGCGGTGGTAATGGGAGGCAAAAGCTCAAAGGG 20063 Query 61586 TCGTGAGGAAGAGGC 61600 |||||| || |||| Sbjct 20064 TCGTGAAGAGCAGGC 20078 >seq6040 Length=129903 Score = 82.4 bits (90), Expect = 3e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 24365 TATTATCCTACGCT-CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCC 24422 ||| ||||| | | |||||| |||||||||| ||| ||||| ||||||||||||||| Sbjct 118260 TATAATCCTGCACCGCGGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCT 118319 Query 24423 AGGTCGCTGGTTCAAATCCAGCA-AGGCCACCAA 24455 |||| ||||||||| ||||| | ||||||||| Sbjct 118320 TGGTCACTGGTTCAAGTCCAGTAGGGGCCACCAA 118353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198420631695468