Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21876 131 2e-25 seq119770 93.3 4e-14 seq138766 89.7 5e-13 >seq21876 Length=2391 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| |||| |||||||| | ||| || || || ||||| ||||||||| | Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || || || ||| |||| || ||||||||||| || || Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | ||||| |||||| | ||| ||| Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| ||||||||| || || ||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | |||||||| | ||| ||||| ||||| |||||||| || | Sbjct 510 CCACCACGTAGACGTAGGACCAAATGGAGCGTTGACTCCTTTTGGATATTGTAGTCAGAC 451 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || || |||||| |||| || ||||||||||| || || Sbjct 450 AAGGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGCTGCTGATCTGGGGGA 391 Query 127007 ATGCCCTCCTT 127017 || |||||||| Sbjct 390 ATTCCCTCCTT 380 >seq119770 Length=1537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| ||||| |||| || | || || ||||||||||||||||| ||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| |||||||| ||| | || | || || ||||| || || Sbjct 926 AGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 985 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| ||| | | || |||| | ||| | |||||| | ||| || Sbjct 986 ATACCTTCTTTATCC-TGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCAC 1044 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || ||||| || ||||| ||||| Sbjct 1045 CTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 >seq138766 Length=1258 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||| || ||||||||||| || |||||||||||| | || | ||| || ||||| Sbjct 843 ATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTG 784 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || ||||| |||||| || ||||||||| || || || ||||| || ||| ||||| Sbjct 783 CTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTT 724 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||||| | || || | || | ||| || || | || | ||||| || || Sbjct 723 GGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGT 664 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || ||||| Sbjct 663 TAGTGTTTTTACGAAGATTTGCAT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474674343947040