Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_012223.2 Length=44899 Score E Sequences producing significant alignments: (Bits) Value seq139038 284 3e-72 >seq139038 Length=11747 Score = 284 bits (314), Expect = 3e-72 Identities = 872/1321 (66%), Gaps = 43/1321 (3%) Strand=Plus/Minus Query 28200 CGACGCTCGGCGACCAGTTCGTCCAGTGTGCCGCGCGCCTGGATAATGTAGACGAATACT 28259 || ||||| ||||| | |||||| || || ||| ||||| || | | | || || ||| Sbjct 10843 CGGCGCTCCGCGACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACT 10784 Query 28260 GGACGAGGGTGTCCGGCTTGCATCTGGCGAACTGGCCCGATACGCTCCACGATCTGCGCA 28319 || || || || || || || || || |||||||| || || || |||||||||| | Sbjct 10783 GGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAA 10724 Query 28320 AAGTGCTCATAGTTCCAGGTGTCTGAGAAGATAGCAAGGTGGTGTCCGCCATCCTGCAAG 28379 ||| || ||||||| || || || | || || ||||||||||| || |||||| Sbjct 10723 TAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAG 10664 Query 28380 TTAAGGCCGTGACCCGCCGAAGCCGGGTGTGCGAACATGATGGGGATCTCACCCCTGTTC 28439 ||||||||||| || || |||||||| || || | || ||||||| || |||| Sbjct 10663 TTAAGGCCGTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTC 10604 Query 28440 CACGCTTCCATA-TCCTTATTCCCTTGCTTTCCCTTACCCATCGCGACGCCGTGCGGGAA 28498 ||| || ||| | | || | | || || || |||| || ||| | | ||||| Sbjct 10603 CACAGCTCGATATTGCGGGTTGCGGT-TTTACCTTTGCCCAGTGCCACGGCCTCGGGGAA 10545 Query 28499 TTTCTTCTTAAGACGTGCCAAGTCATGCTTGTACTGGTATGCGACGAGCAACGGCGCGCC 28558 ||||||| | ||| || |||||| || | || || || | || ||||| || Sbjct 10544 TTTCTTCAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACC 10485 Query 28559 GTTCAACTCCTCCACGATACTTTCCAGCGCGTCCAGTTTAGCGTCGTGAATTTTCACCCA 28618 ||| | ||| || ||| || ||||||||||| || ||| ||||| | |||| Sbjct 10484 GTTGAGCTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCA 10425 Query 28619 TTCGTCGGTGCGCTCGCCGTCTTCGTCGACTTTATACACGGCCCCGGAAGCAAGCTGAAG 28678 || | || |||| ||||| ||||| ||| ||||| |||||||| | ||| | Sbjct 10424 GTCACCTGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAA 10365 Query 28679 GCACTTAATAGTCTTCGACGCGGCGTTAGCCGCCTCCACTGTCCCGCTTTCCAGTTCGGC 28738 ||| ||| ||||| | ||| || ||| | || || ||| |||| || || ||||| Sbjct 10364 GCATTTAGCCGTCTTGGCCGCCGCATTAACGGCGTCGACTTTCCCCTCATCGAGATCGGC 10305 Query 28739 AAATAGCTCCGCTT--CGAACTGGTCATAAATCTTGCGGGCTTTCTTCGGCAGGTCCACA 28796 || | |||| | | | |||||| | || | ||||| ||||||| || Sbjct 10304 CTTCAG--CAGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACC 10247 Query 28797 ACAACCGG-CGTATAGATCGGCTTGTCACACCCGAAGTATTCAGCCGCGTCAACTGTTAG 28855 | ||| || | |||| || ||||| |||||||||| || |||||| || || || Sbjct 10246 GGACGCGGAACTACA-ATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAG 10188 Query 28856 CGACACGTCGGACA---GGCGTTGT-TG-GAT-TTCT-TTCTCGGAGTTCTTAAGCGGGG 28908 ||| | ||||| || || ||| || | | |||| |||||| | || | || Sbjct 10187 CGAGATGTCGGCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTA--TGAGG 10130 Query 28909 CGTGCTGCATAGTGAAGCTGCCAGGCTTAACAGGCTTGCTAATAAACCAGCGATCCGTGA 28968 | | || || | |||| | ||||| |||| | || | || || ||| Sbjct 10129 TCTACGGCGTATT--TGCTGTC-GGCTT--TTTGCTTCGAGGTGAAATACCGGTCTTTGA 10075 Query 28969 ATGCCTTATAACTACTGCCGAGGCGTTCGCCCCCGTCGACAAACCACGTCTGGCCCCATA 29028 | || | || |||| || || |||| | || | |||||| |||| ||||| | Sbjct 10074 ACGCGGTGAAAGATGTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAA 10015 Query 29029 GGTCTTTTAGTCCGTTTGGTGCGGGTGTGCCGGTCAGGTT-----AAT-CCAGCGCTTGA 29082 | || || || ||||||| ||||| || || || | ||| ||| || | |||| Sbjct 10014 GATCCTTGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTGA 9955 Query 29083 CG------TGCTTATGTGCGATCGCCGCCAGGGCGCGGGCGCGCTTACTTCCCTGCTTGC 29136 || | |||||| ||||| | || || |||||||| ||| ||| | || Sbjct 9954 CGCCTTTTTTCTTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTA-GACCCGCCACGC 9896 Query 29137 -TTCTATATCCTTTCAGCTTAGTGGATTCATCGGCAACAACGACCGTAAAGGGCCACTCG 29195 ||| | || ||||| || ||||| |||||||| || || ||||||||||| ||| Sbjct 9895 GTTCGGAACGACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATCG 9836 Query 29196 TCGCCGCAATACTCAACAAGCCACTCAACCACATCATAGTTAACACAAACCACGTTAGCG 29255 || || || | || | ||| || | | ||| |||||| ||| ||||||||| | Sbjct 9835 TCACCAAGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTATCC 9776 Query 29256 TCGCTCTCAAGCGCAGCGATGCGGTCCTTCT-CTGACCCGGTGCCGTCTACTACCAGCAG 29314 | | | || | | ||| | || ||| |||||||||||| || || |||| Sbjct 9775 TTACCGGCGAGTAC-TTGTTGCCGATAGGCTACTGGCCCGGTGCCGTCGACGACTTGCAG 9717 Query 29315 GGCGGGGAAGCGCCATTTTTCTTGTTCCGGGGGCCATGTGCCAGATGCAACGCGCAGCGG 29374 ||||| || | |||||| ||||| || |||||| || | || |||||||||||||| Sbjct 9716 TGCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGCGG 9657 Query 29375 GGCCAGCACCAGTACGCGGTCCTCCTGGTTGGAC-AGGATGCCGGTCTGGAACATTTTAT 29433 || ||||| || ||||| || | ||| | | || |||| ||| |||||| | | Sbjct 9656 CGCGAGCACAAGGACGCGATCTT--TGG--GCCCGAGTTCGCCGCTCTTGAACATCTGGT 9601 Query 29434 TCAGCGCCCACATGGTCGCGCCTGTTTTACCCGACCCCATTGTCGCCCAAATATTGCAGC 29493 | |||||||||| || ||||| ||||| || ||||| || || | | |||||||| Sbjct 9600 TTAGCGCCCACAGTGTGGCGCCGGTTTTGCCACTACCCATCGTGGCGTATAGATTGCAGC 9541 Query 29494 G 29494 | Sbjct 9540 G 9540 Score = 230 bits (254), Expect = 7e-56 Identities = 490/727 (67%), Gaps = 16/727 (2%) Strand=Plus/Minus Query 31759 GGTCGTCGCTATACTCGCCTCGCGCCAGGTTTTGCGGCTGGAAGCCTTTACCGGCCCAGC 31818 |||||||| || | || || || || || ||||| || |||||| || ||||| | Sbjct 7746 GGTCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATC 7687 Query 31819 GTAGCGTGCGCTTTGCCCCACCATACTGAAGACAACCACGGCGGCGACCATCGGCGGACA 31878 ||| || ||||| || |||||||| ||||||||||| ||||| || || |||||||||| Sbjct 7686 TTAGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACA 7627 Query 31879 GACCATTTACAAGCGGATTGTACTTAGTCGATGCCGTTGATGACGCACCGAGGCGCATTT 31938 |||| | | ||| || ||||| || |||||||||||||| | || ||||||||||||| Sbjct 7626 GACCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTT 7567 Query 31939 CGATAAGCACTTTGCCTTCGTCGGGGAAGTCTGGGTCTTCCAGCAGGTCGTTAAGCGTG- 31997 | || | || | ||||||| |||| ||||| ||||| |||||||| ||| | Sbjct 7566 CAATGATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTC---CAGCAAGA 7510 Query 31998 --GATTTCTGCGCGTTGTGAATTGTGAACGCAGGCGCGAGGTCGCGCAGCGCTGGCAAGA 32055 | ||||| || || | | ||| ||| || || || |||||| || |||| || Sbjct 7509 CCGCCTTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGA 7450 Query 32056 AGTCATTGCCAGTCAG--CTTACCGCCGAAGCGCTCCCAGGCTTCTTCCTTCAATTCTTC 32113 | || || || || || | |||| | || || || | || | ||||| Sbjct 7449 AATCCGCACCGGTAAGACCTGA--GCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTT 7392 Query 32114 CTTATGCGCCTGTACCGCTTTGATCGCAGCGCGCGCCAGGTCAACGTCCACATAGAAGCC 32173 ||||||| |||||| || | | ||| || || || || || || || || || Sbjct 7391 CTTATGCTCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCC 7332 Query 32174 GCGGTCATTGATCAACTGGTCAATAAGCAGGATTTCGTCTTCCTTCGGCGTGTTACCCCA 32233 |||||||| || | |||||||| | | ||| || ||| || |||| ||| Sbjct 7331 TCGGTCATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCCA 7272 Query 32234 GTCCGGTATGCGCCAATAGACTTCCCTCATCGCTATAATATCCAGCGCGGCATAGCGCAG 32293 || | || | || | || | ||| | | ||||| || || ||| | Sbjct 7271 TGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTAC 7212 Query 32294 GAA---TTTAGCCCATTCTTCAGGGTGAGTCTCGCGAGTGTAGCGGCGGATTTTGTAAGT 32350 || ||| ||||||||| ||||| |||| |||||||| || || |||||| | Sbjct 7211 AAAGCGTTT---CCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATT 7155 Query 32351 CTTAGGGGTGGGCTTACAGAATCGTTTAATCAGCGCCTTGCCTGCCTTATCCTTCGCGTG 32410 |||||| ||||| |||||||| || | |||| |||||| || |||||||| || ||| | Sbjct 7154 CTTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAG 7095 Query 32411 CTCTGCGTCAACGCCCAGCACCTGGCATTGCATATCGAGGCTACCGGGCAGCGCGTGGCG 32470 ||| || |||| ||||| | ||| | | ||||| ||| |||| ||||| || Sbjct 7094 CTCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCG 7035 Query 32471 AAAGGCC 32477 ||||| Sbjct 7034 GTAGGCC 7028 Score = 192 bits (212), Expect = 2e-44 Identities = 498/748 (67%), Gaps = 16/748 (2%) Strand=Plus/Minus Query 38359 TGCACCGATGCGGATCTGGATAACGAGCCGGTCGCACTATTCAGTAAGCACGACCCGATT 38418 |||||||| || ||| || || || ||| || | |||| |||| ||| ||||| Sbjct 1270 TGCACCGACGCCGATTTGATGAATGAACCGTCTGCCTTGTTCACTAAGAACGTGCCGATC 1211 Query 38419 ATCGAGGGGTTGATTAACTTTAAATCGACCTGGTATCTCGCCGGTGAGTCGAACATTGGT 38478 || || ||||| | ||||| |||||| ||||| || || || || ||||| || Sbjct 1210 ATTGATGGGTTTTTAAACTTCCGATCGACGTGGTACGCGGCGGGCGAATCAAACATAGGC 1151 Query 38479 AAGTCTTTCTATGTGCTGGGGCAAATGGCGTCAGTATCTGCCGGTATTCCGTTTgggggg 38538 || || |||| || || ||| ||||| | || | || || || || |||| |||| Sbjct 1150 AAATCGTTCTTCGTCCTTGGGGCTATGGCCGCTGTCGCCGCTGGCATACCTTTTGCGGGG 1091 Query 38539 gCGAAGGTCGTCCAGTGCCACAACTTCTATTTCGATGCGGAAGGTGGCGA-AG-CCTCAA 38596 |||||| || | | || ||||||| ||||||| ||||||||||| || |||| Sbjct 1090 CAGAAGGTTATCAAATCTCATTGCTTCTATCTCGATGCCGAAGGTGGCGAGAGTTCTCAC 1031 Query 38597 ATCAGCGTAAAGAAGCATTGCAGATTAAATACGAGCACGACCTGGACAAGCTGCACATTA 38656 | | | ||| | || | ||||| || || | | ||||| | ||||||||| Sbjct 1030 TTAA--GGAAACAGGCGCTCCAGATAAAGTATCAAGATGACCTCAATTGGCTGCACATAG 973 Query 38657 TCGATCTGCAATCACGCGGCTGGGATATCACCAGCAAATCCGGCTTGCGCGAAGTTATCA 38716 |||| || | |||||||| ||| | | || ||||| |||| || | | Sbjct 972 TCGACCTCTCGGTATTGGGCTGGGACATCTCAACAAAGACCGGCAAGCGCCGGGTGACCG 913 Query 38717 GCTTCATCAACCGCACCGCTAAC----GGCGAACCAGTTGGCCTGGTGGCGTTCGACTCA 38772 || ||| ||||| || || | | || || |||||| || | || |||||||| Sbjct 912 ACTACAT---CCGCA-CGATAGCCCGTGAAGATCCTGTTGGCATGATAGCCTTCGACTCT 857 Query 38773 CTCAACCAGACTGTTGCGCTGCGGTCCGCCGATGCTAAACCGTTTGACGAGAACAACGCC 38832 || ||||||||| | || | || || |||| | ||||| || ||||| | ||| Sbjct 856 CTAAACCAGACTATGGCTTTACGCTCTTCCGACCTTCGGCCGTTCGATGAGAATAGCGCG 797 Query 38833 AGCGATATGGGTGAAGTGGTCAAAGCGCTGAAAGCCATTGCGGAAAATACAGGTGGCAGT 38892 |||||||| |||||||| || ||||||| || | || || || Sbjct 796 GCAGATATGGGGGAAGTGGTACGCGCCCTGAAAGAGATCTCTATCGCAACCGGCGGATCG 737 Query 38893 GCTGGCGTCATCCACCACCCGGCGAAAGGTGCAAACGGCAGCA-GAACCCCACGCGGATC 38951 ||||||||| | || |||||||| ||||| | | || || | | | ||||| || Sbjct 736 GCTGGCGTCGTTCATCACCCGGCAAAAGGGGGTGGC-GCGTCACGCTCTGCGCGCGGTTC 678 Query 38952 CGGTGCGCTGCATGGTGCTGTCGATTCAGCTTTCTTCCTGGAACAGCCAGA-CGACAACC 39010 ||| |||||||||||||| || ||||| || || || | || ||||| || | | || | Sbjct 677 CGGCGCGCTGCATGGTGCAGTGGATTCGGCCTTTTTTATCGAGCAGCCTGATCCAGAATC 618 Query 39011 AGCCAGGCCAATTGAACCTGTATCACGAAAAGTCACGTAACGGCATCAAGCAAGCGCCGC 39070 | || || | || || ||||||||||| || ||||||||| | |||||| |||| Sbjct 617 A-ATGGGTAAAATCAATCTTTATCACGAAAAATCCCGTAACGGCGTGAAGCAATCGCCAA 559 Query 39071 GTGGCTTCGTCCTGCTCAAGTGCAAGGT 39098 | |||||| | |||| || || || || Sbjct 558 GGGGCTTCCTGCTGCGAAAATGTAAAGT 531 Score = 96.9 bits (106), Expect = 1e-15 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 33294 TCATCACGGAAGCGCAGACCCAAAAGACCAGCA-CCGAGTCCCTTGCCGTTGGTATTGTT 33352 || |||||||| || | || | ||| | ||| || || || |||||||| || | Sbjct 5620 TCTTCACGGAAACGGACGCCGAGAAGTTC-GCAGCCAAGGCCTTTGCCGTTCTCGTTATC 5562 Query 33353 CCACGCCCAGATATCGAGGGACACGTT-GCAATAACAACCGGAGTAGATCTCCTGGCCTT 33411 ||| ||||||| | || ||||| || || || ||| || | || | |||| Sbjct 5561 CCATGCCCAGAAGCTTACAGAGACGTTCGCCATG-CAGCCGCTATAAACTTCGTCACCTT 5503 Query 33412 CGATCTCGTCGCCTTCTACGGTCAGACCTTGTTCAGTCTGCTTCTCGCCGAGTGACGTTT 33471 ||||||| || || | ||||| || ||| ||||||| ||||| ||| ||| Sbjct 5502 CGATCTCATCATTGTCGATAGTCAGGCCAGATTCGGTCTGCTCTTCGCCCGTTGAAGTTA 5443 Query 33472 GAATGATCGGCTGCTTGAACGATTTGGCGTTGATGTACAACATGCCTTCGAATTCTTCGG 33531 || ||||||||||||| || || |||||| ||| | |||| ||||| Sbjct 5442 AGATCCTCGGCTGCTTGAAGCGCTTAGCATTGATGATCAAAGCGTCTTCAAATTCAGGAC 5383 Query 33532 TTACTTCGTCGCGCTCGTCACCGTCGCGAACTGCGCATTCCTTAGAATCCTGGGCGTAGT 33591 || ||| ||||||| |||||||||||| || ||| || ||||| ||||| |||| | Sbjct 5382 TTGGTTCTTCGCGCTGGTCACCGTCGCGCACACAGCACTCTTTAGAGTCCTGTCCGTAAT 5323 Query 33592 GGCGGTCCATCCACTT 33607 ||||||| | ||| || Sbjct 5322 GGCGGTCAAACCATTT 5307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143318165780972