Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq88566 122 8e-23 seq119770 118 1e-21 seq123102 109 5e-19 seq21876 100 3e-16 >seq88566 Length=1870 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | ||| |||| ||||| ||| ||||||||||| || |||||||| | Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| ||||| || || | || || |||||||| || || ||| Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| ||||||||||| || ||||| ||| | || ||||||| || || Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACC 409 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| || || || ||||| || || |||||||| Sbjct 410 TCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq119770 Length=1537 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || || || || |||||||| ||||| ||||| || ||| Sbjct 863 ATACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCG 922 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || ||||||||||| ||| | || | ||||| || || || Sbjct 923 GATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGT 982 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||| ||||| || ||||| ||| | |||||| || | ||| Sbjct 983 GGAATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCC 1042 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || ||||| ||||| ||||| || ||||||||||| Sbjct 1043 ACCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 >seq123102 Length=1410 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||||||||| || || |||||| | || ||| || | || Sbjct 614 TGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATCCTCAAGCTGC 673 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || || ||||| ||||| || ||||||||||| |||||||||| |||| Sbjct 674 TTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAA-TTTT 732 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || | || | || | ||| || |||| || ||||| | || | |||||||| || Sbjct 733 TGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTTTGCCAGT 792 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| |||||||| Sbjct 793 CAATGTTTTAACAAATATTTGCAT 816 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || |||| ||||| || |||||||| || |||||||||||| Sbjct 815 ATACCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCG 874 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || || ||||| || ||| | ||||| ||||| || || | Sbjct 875 --GACAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTG 932 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || |||||||||||||||||||| ||| | ||| | ||| || |||| || Sbjct 933 GTGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCT 992 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | || || | ||| | ||||| || || Sbjct 993 CAACCTCCAAAGTGATGGTTTTTCCCGT 1020 >seq21876 Length=2391 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || | ||| |||||||||||||| || || || |||||| Sbjct 741 ATACCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCG 682 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| || || ||| | || || || ||||| || || Sbjct 681 GACAAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGG 622 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || || | ||| | |||||| || | ||| Sbjct 621 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCA 562 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || | ||||||||| || |||||||| Sbjct 561 ACTTCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451217584538160