Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq2788 183 3e-41 seq38357 84.2 2e-11 >seq2788 Length=136445 Score = 183 bits (202), Expect = 3e-41 Identities = 323/465 (69%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 139634 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 139693 || || |||||||| |||| | | ||||| | |||| |||||| || || ||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 139694 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 139753 || |||||||| || | ||||||| |||||| |||| || || ||||| || | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 139754 ACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCCGCCCCGCCA 139813 || | ||| ||||||| || | ||||| || ||||| | || ||||| || ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 139814 CGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAGAATGGGATA 139873 || | |||||| || ||||| || ||||| |||||||| || || || |||| |||||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 139874 ACGCCAGTATGACGAA--CTTCACCATGCC-CGATCTTAGAT-CCTTCCGCGCGAATCAT 139929 ||| ||||| ||| ||||||| ||| ||| | | || ||| || || Sbjct 19460 CAGCCGGTATG--GAATGCTTCACC--GCCGCGAATCGGGCTACCCAGCGCACGGATGCG 19515 Query 139930 GCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGT 139989 |||||||||||| |||||||| || |||| || || || | ||| || | | || Sbjct 19516 GCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGT 19575 Query 139990 TTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACACGAACTAAATTGGCG 140049 |||||||| | || ||| | | ||||||| || || || || || ||||| Sbjct 19576 CGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCG 19635 Query 140050 TGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGAT 140094 || ||||| ||||| || | |||||| || ||||| ||||| || Sbjct 19636 AGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAAT 19680 >seq38357 Length=36386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 202/306 (66%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 37531 ATCAGGGTAAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGG 37590 ||| || || | |||||| || | |||||| | || || || || ||||| || || | Sbjct 27869 ATCGGGATACATACGCTTGCTGGCACATTCGAGGGCGAGCTGTTTGATGTCATAATTGGC 27810 Query 37591 ATCTTCCGGTTTAAGGTTTAATCCTTCTTCTAAGAACATCACCAGCTTAGGAAACACCGG 37650 || ||| ||| | |||| || || | | | ||||| || |||||||| | Sbjct 27809 GTCGGCCGCCTTATGATTTATGCCGTCGCGAATGGCGAAAACCAGTTTGGGAAACACGGC 27750 Query 37651 AGTTATACCGTCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAG 37710 ||| ||| | ||| ||||| || | || ||| |||| ||| |||||||| Sbjct 27749 CGTTTTACGATTTTTTCCTAATCCGGCGATACGGTTGCGCAGAATCGATTTTTGAATCAG 27690 Query 37711 TTTTTCTTCCCAGCTAGTACCCATACCAAAGGTTAAAGTCACAAAAGGTGTTTGACCGTT 37770 ||| ||| | ||||||| ||||||| || |||||||| || || || ||||| Sbjct 27689 CCGCGCTTGCCAACAGGTACCCAGACCAAAGCCAAAGGTCACAAACGGCGTCTGGCCGTT 27630 Query 37771 GGTAGAGAACAAAGTGTTGATCTCATATTCCAACGCCTGATATCCGTCTAACGTTTCTTT 37830 || | | | || || | ||||||||||| || |||| | |||| | ||||| Sbjct 27629 GGCGGTGTGAAGCGTATTAACCTCATATTCCAGCGACTGAAAGGCGTCGTAGCACTCTTT 27570 Query 37831 TTCTGT 37836 |||||| Sbjct 27569 TTCTGT 27564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531484232184480