Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_012742.1 Length=44080 Score E Sequences producing significant alignments: (Bits) Value seq139046 80.6 7e-11 >seq139046 Length=22897 Score = 80.6 bits (88), Expect = 7e-11 Identities = 220/332 (66%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 5037 CTTCATCAATGCTCGCTTGCTGCGAGGTCTGGAAGTGGTCGAAGAGGCACAGCTGCTGAA 5096 || |||||||||||| ||| || ||| || | |||| ||||| | || ||||| || Sbjct 18282 CTACATCAATGCTCGATTGATGTACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAA 18223 Query 5097 TGGTAATGGCACCGGCCAGAACCTGGCTGGCCTGCTGCCCGCTGCTACTGCCTTC---AC 5153 || | ||||||||||| || |||| || || ||| ||| || |||| | || Sbjct 18222 CGGCGACGGCACCGGCCAAAATCTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATAC 18163 Query 5154 CGCGCCTATCACTGTTGCCAATGCCACGGCGGTTGACCGTCTGCGTCTGGCGATCCTGCA 5213 || | || || ||| || || || || | |||| |||| || || ||| || Sbjct 18162 CGGG---ATTACGGTTACCGGTGATACCGCCGCTGACATTCTGGCTCACGCCATCTATCA 18106 Query 5214 GGCTCAGCTGGCTGAGTTCCCGGCGACCGGCATTGTGCTGAACCCGGCGGATTGGGCTGG 5273 || | | | | || || || | ||| | | ||||||||| || ||| | | Sbjct 18105 GGTTGCGTTATCCGAATTTGACGCTTCGGGCCTCATTCTGAACCCGTTAGACTGGCATCG 18046 Query 5274 CATTGAGCTGATTAAGGATACGCAGGGCCGCTACATCTTGGGTAACCCTCAGGGTGTCTT 5333 ||||| | || |||| ||||| ||||| ||||| |||| ||| || ||||| || Sbjct 18045 CATTGCGTTGCTTAAAGATACTCAGGGTAATTACATTCTGGGCGGCCCGCA-GGTGT-TT 17988 Query 5334 GGCTCCCA--CGCTGTGGGGTCTGCCAGTTGT 5363 | || | ||| ||||||||||||||||| Sbjct 17987 GCGTCTAAACTGCTCTGGGGTCTGCCAGTTGT 17956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140701693170584