Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq104767 167 6e-37 seq1602 82.4 2e-11 >seq104767 Length=4578 Score = 167 bits (184), Expect = 6e-37 Identities = 127/145 (88%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 39060 GCAGTAAACCGCGCATCGCAGCGCGTAACAATCCCGAGTCTTTCAGAAAGCTGAGCCTGA 39119 ||||||| |||||| ||||||||| | || || ||||||||||||||||||||||||| Sbjct 4575 GCAGTAACCCGCGCGTCGCAGCGCATTTCA-TCGAGAGTCTTTCAGAAAGCTGAGCCTGA 4517 Query 39120 GAACTGCCGTATAT-GGTGGCGACCATCTCGGGGACGGCTTTTCTGTGCGAACAGGCTCA 39178 |||| ||||| ||| |||||||||| |||| || |||||||||||||||| |||||||| Sbjct 4516 GAACAGCCGT-TATAGGTGGCGACC-TCTCTCGGGCGGCTTTTCTGTGCGACCAGGCTCA 4459 Query 39179 TCTTTCTAAAAGGTAAACGCTATGA 39203 ||||||||||||||||||||||| Sbjct 4458 CTTTTCTAAAAGGTAAACGCTATGA 4434 >seq1602 Length=1372 Score = 82.4 bits (90), Expect = 2e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31933 AATAAAAACATCTCAGAATGGCGCATCCCTCAAAATGAGGGAATATCCCTCAAAACAGGG 31992 ||||||||| ||||||||||| || ||||||||| |||||| |||||||||| |||| Sbjct 754 AATAAAAACGTCTCAGAATGGGACACCCCTCAAAACGAGGGAGAATCCCTCAAATTAGGG 813 Query 31993 GATAAAACANNNCTCAATTTGAGG 32016 |||||| | ||||| ||| || Sbjct 814 GATAAAGAATCCCTCAAATTGGGG 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130782099208124