Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq31628 86.0 8e-12 seq43985 82.4 9e-11 >seq31628 Length=8758 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 |||||| ||||| | ||| || || |||||||||| ||| || | | ||| ||||| Sbjct 5491 ATCTTTTCCACCTTGTAAACGTGTACCGAATTGACCACGTGGTTCTAATAAATTTATATT 5550 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACC 176046 |||||| || | ||||| | ||||| || ||||| ||| | || || | |||||| Sbjct 5551 GTTTGAACCGACATAGTTTTGTGCCAAATTAACAATGGTAGCTTGTAGTGAAATTTCACC 5610 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCAC 176073 ||||| ||||| ||| | || ||||| Sbjct 5611 ATGATGATAGGCAGACATTTCAGCCAC 5637 >seq43985 Length=4878 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 ||||| | ||||| ||||| ||||| || ||||| ||||| | || | |||||| Sbjct 1764 TACTCAACTATTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTA 1705 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||| | ||||| ||||||||||| ||||||||||| || || ||||| Sbjct 1704 CTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTC 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612440878473360