Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_013600.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq139038 277 5e-70 >seq139038 Length=11747 Score = 277 bits (306), Expect = 5e-70 Identities = 857/1300 (66%), Gaps = 61/1300 (5%) Strand=Plus/Minus Query 27530 CGACGCTCGGCGACCAGTTCGTCTAGTGTTCCGCGCGCCTGGATAATGTAGACGAATACC 27589 || ||||| ||||| | |||||| || || ||| ||||| || | | | || || || Sbjct 10843 CGGCGCTCCGCGACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACT 10784 Query 27590 GGTCGAGGGTGTCCGGCCTGCATCTGGCGAACCGGCCCGATACGTTCAACGATCTGCGAA 27649 || || || || || ||||| || || || ||||| || ||||| |||||||||||| Sbjct 10783 GGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAA 10724 Query 27650 AAGTGCTCAAAGTTCCAGGTATCGGAGAAGATTGCCAGGTGATGACCGCCGTCCTGCAAG 27709 ||| || |||||||| ||||| || | ||||| || || |||||||| |||||| Sbjct 10723 TAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAG 10664 Query 27710 TTAAGGCCGTGGCCCGCCGAT-GCCGGGTGTGCAAACATGATGGGGATCTCGCCCCTGTT 27768 |||||||||| ||||| || | |||||||| || || | || ||||||| || ||| Sbjct 10663 TTAAGGCCGT-GCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTT 10605 Query 27769 CCACGCTTCCATA-TCCTTATTGCCCTGCTTACCCTTACCCAACGCGACGCCGTGCGGAA 27827 |||| || ||| | | |||| | ||||| || |||| || ||| | | || | Sbjct 10604 CCACAGCTCGATATTGCGGGTTGCGGT-TTTACCTTTGCCCAGTGCCACGGCCTCGGGGA 10546 Query 27828 ATTTCTTCTTAAGACGTGCCAGGTCATGCTTATACTGATACGCAACGAGCAACGGCGCGC 27887 |||||||| | ||| || ||||||| ||| | ||| || || | || ||||| | Sbjct 10545 ATTTCTTCAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCAC 10486 Query 27888 CGTTCAACTCCTCCACGATACTTTCCAGTGCGTCCAGCTTCGCGTCGTGAATCTTCACCC 27947 |||| | ||| || ||| || || |||||||||||| ||| ||||| | ||| Sbjct 10485 CGTTGAGCTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCC 10426 Query 27948 ACTCGTCGGTCCGTTCGCCGTCTTCGTCCACCTTATACACAGCGCCGGAAGCAAGCTGAA 28007 | || | ||| | || ||||| |||| | ||| || || |||||||| | ||| | Sbjct 10425 AGTCACCTGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCA 10366 Query 28008 GGCACTTAATTGTCTTCGATGCCGCGTTCGCCGCTTCCACTGTTCCGCT-TTCCAGTTCG 28066 ||| ||| ||||| | ||||| || | || || ||| |||| || || || ||| Sbjct 10365 AGCATTTAGCCGTCTTGGCCGCCGCATTAACGGCGTCGACT-TTCCCCTCATCGAGATCG 10307 Query 28067 GCAAATAGCTCGCTT-TCAAACTGGTCGTAAATCTTGCGGGCTTTCTTCGGCAGGTCCAC 28125 || ||| |||| | | | ||| || | || | ||||| ||||||| || Sbjct 10306 GCCTTCAGC-AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGAC 10248 Query 28126 AACAACCGG-CGTATAGATTGGCTTGTCGCACCCGAAGTATTCAGCCGCGTCAACGGTGA 28184 | ||| || | || | || || || |||||||||| || |||||| || || | Sbjct 10247 CGGACGCGGAACTACA-ATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCA 10189 Query 28185 GGGATACATCTGACA---GACGTTGTTGTATCTCTT----TCTCGGAGTTCTTTAGCGGA 28237 | || | || | || ||| ||| || || |||||| | | | | Sbjct 10188 GCGAGATGTCGGCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTATGAG-- 10131 Query 28238 GCGTGCTGCATAGTGAAGCTGCCAGGCTTAACAGGCTTGCTAATGAACCAGCGGTCGGTG 28297 | | | || || | |||| | ||||| |||| |||| | ||||| || Sbjct 10130 GTCTACGGCGTATT--TGCTGTC-GGCTT--TTTGCTTCGAGGTGAAATACCGGTCTTTG 10076 Query 28298 AATGC-CTTATAGCTACTACCGAGGCGTTCACCACCGTCGACGAACCACGTCTGACCCCA 28356 || || | | || | | || || || | ||| | || | ||||| |||||||||| Sbjct 10075 AACGCGGTGAAAGAT-GTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCA 10017 Query 28357 TAAGTCTTTCAAGCCGTTTGGTGCGGGTGTGCCGGTCAAGTT-----AAT-CCAGCGCTT 28410 | || || | ||||||| ||||| || || || ||||| ||| || | || Sbjct 10016 AAGATCCTTGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTT 9957 Query 28411 GACG------TGCTTATGTGCAATCGCCGCCAGTGCGCGTGCGCGCTTACTGCCCTGCTT 28464 |||| | |||||| || || | || || || ||||| ||| ||| | Sbjct 9956 GACGCCTTTTTTCTTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTA-GACCCGCCAC 9898 Query 28465 GC-TTCGATAGCCTTTCAGCTTAGTCGATTCATCGGCAACAACGACCGTAAAGGGCCACG 28523 || |||| | || ||||| |||||||| |||||||| || || ||||||||||| Sbjct 9897 GCGTTCGGAACGACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAAT 9838 Query 28524 CATCGCCGTAATAGTCGACCAGCCACTCAACCACATCGTAGTTAACACAAACCACGTTAG 28583 | || || || | |||| ||| || | | |||||||||| ||| ||||||||| Sbjct 9837 CGTCACCAAGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTAT 9778 Query 28584 CGTCGCTCTCAAG-------CGCCGCAATACGGTCCTTCTCCGGCCCGGTGCCGTCTACA 28636 | | | | || |||| ||| | | || |||||||||||||| || Sbjct 9777 CCTTACCGGCGAGTACTTGTTGCCG--ATAGGCTACT-----GGCCCGGTGCCGTCGACG 9725 Query 28637 ACCAGCAGGGATGAGAACCGCCATTTCTCCTGCTCCGGGGGCCATGTACCTGACGCAACA 28696 || |||| | | |||| |||||| || ||||| |||||| || | |||||||| Sbjct 9724 ACTTGCAGTGCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACG 9665 Query 28697 CGCAGCGGGGCCAGCACCAGTACGCGGTCCTCATGATGGGAC--AGGACGCCAGTCTGGA 28754 |||||||| || ||||| || ||||| || | |||| | || |||| ||| || Sbjct 9664 CGCAGCGGCGCGAGCACAAGGACGCGATCTT-----TGGGCCCGAGTTCGCCGCTCTTGA 9610 Query 28755 ACATTTTATTCAGCGCCCACATTGTCGCGCCGGTTTTACC 28794 |||| | || |||||||||| ||| ||||||||||| || Sbjct 9609 ACATCTGGTTTAGCGCCCACAGTGTGGCGCCGGTTTTGCC 9570 Score = 201 bits (222), Expect = 3e-47 Identities = 500/752 (66%), Gaps = 18/752 (2%) Strand=Plus/Minus Query 38936 GGATGTACGGACGCAGACCTGGACAACGAGCCGGTTGCACTGTTCAGTAAGCACGACCCG 38995 || || || ||||| || || || || ||| ||| |||||| |||| ||| ||| Sbjct 1273 GGCTGCACCGACGCCGATTTGATGAATGAACCGTCTGCCTTGTTCACTAAGAACGTGCCG 1214 Query 38996 ATCATCGAGGGGTTGATTAACTTCAAATCGACCTGGTATATGGCTGGCGAGTCGAACATC 39055 ||||| || ||||| | |||||| |||||| ||||| ||| ||||| || ||||| Sbjct 1213 ATCATTGATGGGTTTTTAAACTTCCGATCGACGTGGTACGCGGCGGGCGAATCAAACATA 1154 Query 39056 GGTAAATCGTTCTACGTGCTGGGCCAAATGGGTGCGGTTGCCGCGGGGATTCCGTTTGGG 39115 || |||||||||| ||| || || |||| || || ||||| || || || |||| | Sbjct 1153 GGCAAATCGTTCTTCGTCCTTGGGGCTATGGCCGCTGTCGCCGCTGGCATACCTTTTGCG 1094 Query 39116 GGTGCGAAGGTCGTCCAGTCCCATTGCTTCTATTTCGACGCGGAAGGTGGTGAAGCCTCC 39175 || |||||| || | || |||||||||||| |||| || |||||||| || || Sbjct 1093 GGGCAGAAGGTTATCAAATCTCATTGCTTCTATCTCGATGCCGAAGGTGGCGAGAGTTCT 1034 Query 39176 AACCAGCGTAAGGAA----GCATTGCAGATCAAATATGAGCACGACCTGGACAAGCTGCA 39231 | | ||||||| || | ||||| || ||| | | ||||| | |||||| Sbjct 1033 CA----CTTAAGGAAACAGGCGCTCCAGATAAAGTATCAAGATGACCTCAATTGGCTGCA 978 Query 39232 CATTATCGATCTGCAATCACGCGGCTGGGATATCACCAGCAAGTCTGGCTTGCGTGAAGT 39291 ||| |||| || | |||||||| ||| | | ||| | ||| ||| || Sbjct 977 CATAGTCGACCTCTCGGTATTGGGCTGGGACATCTCAACAAAGACCGGCAAGCGCCGGGT 918 Query 39292 TATCAGCTTTATCAATCGCAC---CGCCAACGGCGAACCGGTTGGCCTGGTGGCGTTCGA 39348 | | || ||| ||||| ||| | || || |||||| || | || ||||| Sbjct 917 GACCGACTACATC---CGCACGATAGCCCGTGAAGATCCTGTTGGCATGATAGCCTTCGA 861 Query 39349 CTCACTCAACCAGACTGTTGCGTTGCGGTCCGCTGATGCCAAACCGTTCGACGAGAACAA 39408 ||| || ||||||||| | || || || || | || |||||||| ||||| | Sbjct 860 CTCTCTAAACCAGACTATGGCTTTACGCTCTTCCGACCTTCGGCCGTTCGATGAGAATAG 801 Query 39409 CGCCAGCGATATGGGTGAAGTGGTCAAAGCGCTGAAGGCCATCGCGGAAAATACAGGCGG 39468 ||| |||||||| |||||||| || ||||| | ||| | || ||||| Sbjct 800 CGCGGCAGATATGGGGGAAGTGGTACGCGCCCTGAAAGAGATCTCTATCGCAACCGGCGG 741 Query 39469 CAGTGCGGGCGTCATCCACCACCCGGCGAAGGGTGCAAACGGCAGCA-GAACACCACGCG 39527 || |||||| | || |||||||| || || | | || || | | | |||| Sbjct 740 ATCGGCTGGCGTCGTTCATCACCCGGCAAAAGGGGGTGGC-GCGTCACGCTCTGCGCGCG 682 Query 39528 GGTCCGGCGCGCTGCATGGCGCTGTTGATTCCGCGTTCTTCCTGGAGCAACCGGA-CGAC 39586 | ||||||||||||||||| || || ||||| || || || | ||||| || || | | Sbjct 681 GTTCCGGCGCGCTGCATGGTGCAGTGGATTCGGCCTTTTTTATCGAGCAGCCTGATCCAG 622 Query 39587 AACCAGCCCGGACAATTGAACCTGTACCATGAGAAGGCACGTAACGGCATCAAGCAAGCG 39646 || || || || | || || || || || || | ||||||||| | |||||| || Sbjct 621 AATCA-ATGGGTAAAATCAATCTTTATCACGAAAAATCCCGTAACGGCGTGAAGCAATCG 563 Query 39647 CCGCGCGGCTTCGTCCTGCTTAAGTGCAAGGT 39678 || | |||||| | |||| || || || || Sbjct 562 CCAAGGGGCTTCCTGCTGCGAAAATGTAAAGT 531 Score = 185 bits (204), Expect = 3e-42 Identities = 492/745 (66%), Gaps = 24/745 (3%) Strand=Plus/Minus Query 32459 GGTCGTCGCTGTACTCGCCACGCGCCAGGTTTTGAGGTTGAAAGCCTTTACCGGCCCAGC 32518 |||||||| ||| | ||||| || || || || |||||||||||| || ||||| | Sbjct 7746 GGTCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATC 7687 Query 32519 GTAGCGTGCGCTTTGCCCCACCATACTGAAGACACCCACGGCGGCGACCATCTGCGGATA 32578 ||| || ||||| || |||||||| |||||||| || ||||| || || || ||||| | Sbjct 7686 TTAGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACA 7627 Query 32579 AGCCGTTAACTAGCGGATTGTACTTAGTCGATGCCGTTGATGACGCACCGAGGCGCATTT 32638 || | | || || ||||| || |||||||||||||| | || ||||||||||||| Sbjct 7626 GACCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTT 7567 Query 32639 C---GATAAGCGCTTTGCCTTCGTCGGGGAAGTCCGGGTCTTCAAGCAGGTCGTTAAGTG 32695 | ||||| ||| | ||||||| |||| || || ||||| |||||||| | Sbjct 7566 CAATGATAA-CGC--GGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGA 7510 Query 32696 TGGATTTCTGCGCGTTGTGGATTGTGAACGCCGGGGCGATATCACGCAGGATTGGCAGGA 32755 | ||||| || || | | ||| ||||||||| | | | |||| ||||||| Sbjct 7509 CCGCCTTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGA 7450 Query 32756 AGTCATTGCCTGTCAGTTTACC---ACCAAATCGCTCCCAGGCTTCTTCCTTCAATTCTT 32812 | || || || || ||| || || || || || | || | ||||| Sbjct 7449 AATCCGCACCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTT 7393 Query 32813 CCTTATGCGCCTGCACCGCTTTGATCGCGGCGTTCGCCAGGTCAACGTCCACATAGAAGC 32872 ||||||| |||| | || | | |||| || || || || || || || | Sbjct 7392 TCTTATGCTCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACC 7333 Query 32873 CGCGGTCGTTGATCAACTGGTCAATAAGCAGTATCTCGTCTTC---CTTCGGAGTATTAC 32929 | ||||| || || | |||||||| | | ||| || ||| || || | || Sbjct 7332 CTCGGTCATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTT-- 7275 Query 32930 CCCAGTCCGGTATGCGCCAGTAGACTTCACGCATCGCGATAATATCCAGCGCGGCATAGC 32989 ||| || | || || || | |||||||| | | ||||| || || ||| Sbjct 7274 -CCATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGT 7216 Query 32990 GCAGAAA---TTTGGCCCATTCTTCCGGGTGAGTCTCGCGGGTGTAGCGGCGGATTTTGT 33046 | ||| ||| ||||||||| ||||| |||| |||||||| || || |||| Sbjct 7215 CTACAAAGCGTTT---CCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGT 7159 Query 33047 AGGTCTTAGGGGTAGGCTTACAGAATCGTTTAATCAGCGCCTTTCCTGCCTTATCCTTCG 33106 | ||||||| || || |||||||| || | |||| |||||| || |||||||| || | Sbjct 7158 AATTCTTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGG 7099 Query 33107 CGTGCTCTGCGTCAACGCCCAGTACCTGGCACTGCATATCGAGGCTACCGGGAAGCGCGT 33166 || |||| || |||| || || | ||| | | ||||| ||| || | ||||| Sbjct 7098 CGAGCTCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGT 7039 Query 33167 GGCGAAAGGCCATAATCATGGTGTC 33191 || ||||| | ||| ||||| Sbjct 7038 ATCGGTAGGCCTCGACCATTGTGTC 7014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144180739169012