Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq21876 123 6e-23 seq119770 116 9e-21 seq88566 98.7 2e-15 >seq21876 Length=2391 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | || || || || ||||| || | |||||| || | ||| || Sbjct 732 CGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTA 673 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| ||||||||||| | ||||||||| || || |||||| Sbjct 672 CGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCC 613 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| ||||| |||||| | | || || |||| Sbjct 612 TCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGG 553 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||||| || || ||||| Sbjct 552 GTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTG 515 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| || ||||||||||||| |||||||||| ||| || | |||||| Sbjct 495 AGGACCAAATGGAGCGTTGACTCCTTTTGGATATTGTAGTCAGACAAGGTACGGCCATCT 436 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||| ||||| || |||||||| | ||||||||| || || |||||| || Sbjct 435 TCCAATTGCTTGCCAGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTC 383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 199462 CAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAA 199521 |||||||| ||| || ||||| ||||| || |||||||| | ||| || || || ||| Sbjct 907 CAAAGTCCGTCCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 848 Query 199522 AATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTAC 199581 ||| ||||| ||||||||||| || ||| || | ||||| | || || || Sbjct 847 AATACCTTCCTTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGAC 788 Query 199582 ATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || | |||||| || || ||||| Sbjct 787 TTCTAAAGTGATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTG 743 >seq119770 Length=1537 Score = 116 bits (128), Expect = 9e-21 Identities = 155/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||| || || || || ||||| | |||||||| | | ||| | ||||||||| Sbjct 884 ACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATCTTCT 943 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | || ||||||||||| || ||||| || || || || ||| |||||| |||||| Sbjct 944 AATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCCTGA 1003 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || || ||| | |||||| | || || || || || ||||| ||||| Sbjct 1004 ATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGTCTTG 1063 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || ||||| || |||||||| |||||| Sbjct 1064 CCAGTTAGTGTTTTGACGAAAATTTG---CATTTT 1095 >seq88566 Length=1870 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | ||| || ||| ||||||| | ||| ||||||||||| || || Sbjct 260 GTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGTCCGTCTTCCAGCTGTTTGCCA 319 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | ||| ||||| || || ||||||||| || |||||||| || Sbjct 320 GCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTGGCTTTG 379 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | || || | | ||| || || | ||||| || |||||||| || ||| Sbjct 380 ACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTTACCCGTAAGGGTT 439 Query 199613 TTCACAAAAATTTG 199626 || || || ||||| Sbjct 440 TTAACGAATATTTG 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176821319486082