Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq123102 109 6e-19 seq21876 95.1 1e-14 seq138766 87.8 2e-12 seq119770 87.8 2e-12 >seq123102 Length=1410 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| ||||||| ||||| | || || ||||||||||||||||| Sbjct 626 TCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAA 685 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 || || || || ||||| | || | || ||||| | | ||| || | ||| | || | Sbjct 686 ATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTAT-CTTGAATTTTTGCTTTAACGTT 744 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||| || |||| ||||| |||||||| |||| |||||||| Sbjct 745 CTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAAC 804 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 805 AAATATTTGCAT 816 >seq21876 Length=2391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||||| |||| ||| | || ||||| || || ||||| ||||| Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | |||||||||||||| || || |||||||| || | || Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| ||| | | | | ||||| || || || Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| |||| ||||| || ||||||||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq138766 Length=1258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||| ||| || || |||||||| ||||| || || | | || || Sbjct 848 ACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCA 789 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| | |||||| || | || | | ||| || ||| Sbjct 788 AGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGT 729 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| || | || | ||| | ||||| |||| || || ||||| Sbjct 728 ATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTT 669 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 ||||| || ||||| || ||||||||||||| Sbjct 668 CCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 >seq119770 Length=1537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| ||||| || | ||| || ||||| ||||||||||||||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || | || || |||||||| || | || || || || | || Sbjct 926 AGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 985 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| ||||| |||| | | | ||||| | ||||| Sbjct 986 ATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACC 1045 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| || || ||||| || || |||||||||||| Sbjct 1046 TCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTTG 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564255973267920