Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq2788 194 2e-44 seq14905 134 2e-26 seq38357 91.5 2e-13 >seq2788 Length=136445 Score = 194 bits (214), Expect = 2e-44 Identities = 298/421 (71%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 41091 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 41150 ||||| || || ||||||||| | || || || || || || ||||||||| | ||| Sbjct 19677 TCTCTGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGC 19618 Query 41151 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT---GCGATC 41207 ||| | || || | || || || | || | ||||| ||||| || ||| Sbjct 19617 GTACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATC 19561 Query 41208 GTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATG 41267 ||||| || ||||||| || || ||||| || | ||||| || | || || || || Sbjct 19560 GTGAAATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTG 19501 Query 41268 GGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACA 41326 ||| || || || |||||||| | ||||| || ||| || || |||| || || Sbjct 19500 GGTAGCCCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGT-ATCCCGTTCTATAAGCA 19442 Query 41327 TATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACT 41386 |||| || || ||||||||||| || ||||| ||||| || || |||||||| || || Sbjct 19441 CTTCCAGACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCT 19382 Query 41387 GTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGG 41446 || || || | ||||| ||||||||||||| ||| ||||| |||| |||||| || Sbjct 19381 GTTCTACCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGG 19322 Query 41447 CGTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATGTA 41506 || |||| |||||||||||||| | || ||||| || ||| | ||| | ||||||| Sbjct 19321 TGTTGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTA 19262 Query 41507 T 41507 | Sbjct 19261 T 19261 Score = 100 bits (110), Expect = 3e-16 Identities = 237/353 (67%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 42860 GCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCC 42919 ||||||| | || | ||||||| |||| |||| || || || |||||||||||||| Sbjct 17797 GCAGAAATATGAAATCTTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCC 17738 Query 42920 GGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCA-AAACTTCCTGAACATGAAA 42978 ||||||||| || | | ||||||||| | | | || || || || ||||||| Sbjct 17737 GGAAGAAGTTGACGTTGCCCGTGACCGTATCGACT-TCCAGGGTCTGCCGGAGCATGAAA 17679 Query 42979 AAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTG 43038 || ||||||| ||||| ||||||| || ||| | || | |||||||| ||| Sbjct 17678 AACACATTTTCCTGAGCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTA 17619 Query 43039 GGCCTAACCTCGCATTTTTGCC----AATTGCATCCGATGTGAGCATGGAAACCTGGATC 43094 | |||||| | || | |||| | | ||| | | |||| | || |||||| | Sbjct 17618 GCCCTAACGTGGCGCTACTGCCGCTGATCTCCATTCCA---GAGC-TTGAGACCTGGGTT 17563 Query 43095 GAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAAC 43154 || || |||||||| || || |||||| || |||||||||||| ||||| Sbjct 17562 GAGACCTGGGCGTTCTCCGAGACTATCCACTCACGCTCGTACACGCATATTATTCGTAAT 17503 Query 43155 TTACACATCGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAATGAAGCGAT 43207 | || |||||| || | ||| ||| | ||| | ||| |||| ||| Sbjct 17502 ATCGTCAACGATCCGTCACTGGTGTTTGACGATATCGTCACCAACGAAGAGAT 17450 >seq14905 Length=119551 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 51202 TCAACCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGA 51261 ||| ||||| ||| || ||||| || |||||| | ||||| ||||| |||| || || Sbjct 42258 TCAGCCAACGGTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGA 42317 Query 51262 AACTCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTC 51321 || ||| |||||| | |||||||||| || || || ||||| || |||||||| || Sbjct 42318 GACGCTCGAAGATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTC 42377 Query 51322 TGGTTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCG 51381 || || || |||||||||||||| |||| || |||||||| | ||||| ||| | || Sbjct 42378 GGGGTACGCCGTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCG 42437 Query 51382 AACCTTTACAGAGAGTCTATAA 51403 || || || |||| || ||| Sbjct 42438 TACTTTCACTCAGAGCCTGTAA 42459 >seq38357 Length=36386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 208/313 (66%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 153474 ACAGAAAAGGATGTATTCGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACAT 153533 |||||||| || | ||| || || ||||| |||||||| || || || | || Sbjct 27564 ACAGAAAAAGAGTGCTACGACGCCTTTCAGTCGCTGGAATATGAGGTTAATACGCTTCAC 27623 Query 153534 ACTGCAAATGGACAGACGCCTTTTGTCACGATCACTTTCGGTATGGGTACTGGTTGGCGC 153593 || || || || |||||||| ||||| || | || ||| ||||||| |||||| Sbjct 27624 ACCGCCAACGGCCAGACGCCGTTTGTGACCTTTGGCTTTGGTCTGGGTACCTGTTGGCAA 27683 Query 153594 GAACGCATGATCCAGAAAGCAATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGC 153653 | || |||| || ||| | |||||| |||||||| ||| | || ||||| | Sbjct 27684 GCGCGGCTGATTCAAAAATCGATTCTGCGCAACCGTATCGCCGGATTAGGAAAAAATCGT 27743 Query 153654 ATTACTCCTGTATTCCCAAAACTGGTTATGTTTATGGAAAAAGGGATTAACCTTAATCCG 153713 | || | || || || ||||||||| | || | || || || | ||| || Sbjct 27744 AAAACGGCCGTGTTTCCCAAACTGGTTTTCGCCATTCGCGACGGCATAAATCATAAGGCG 27803 Query 153714 GAAGACAGAAACTATGATATTAAGAAATTGGCCCTGGAATGTTCTTCAAAGCGTATGTAT 153773 | ||| || ||||| || || | | ||||| |||||| | |||||||||||| Sbjct 27804 GCCGACGCCAATTATGACATCAAACAGCTCGCCCTCGAATGTGCCAGCAAGCGTATGTAT 27863 Query 153774 CCGGATATTATTA 153786 || |||||| ||| Sbjct 27864 CCCGATATTCTTA 27876 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 154027 AAGCCCTGATGACTCGTATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCC 154086 |||| ||||||| ||||||| | || ||| || |||||| | || || ||||||| Sbjct 28126 AAGCGTTGATGACCCGTATCGCCCGACTCGACGGGGTAAAAGCCCGCGTCGCGCCGATCC 28185 Query 154087 TTTATACAGAAGGTGCGTTTGGTGTAAGGTTGAAACCCGATGATGAAATTCTGGAACTGT 154146 |||||| || ||||| | || || | |||||| |||||||||| || ||| | | Sbjct 28186 TTTATATGGAGGGTGCCTGCGGCGTGCGCTTGAAAGCCGATGATGACATCAGCGAAATCT 28245 Query 154147 TCAAAAATGGACGCAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAACT 154199 ||||||| || || || ||| ||||| || ||||| |||| |||||| Sbjct 28246 TCAAAAACGGGCGGGCCTCCATCTCGCTGGGTTATATCGGCGTGCACGAAACT 28298 Score = 86.0 bits (94), Expect = 7e-12 Identities = 192/280 (69%), Gaps = 9/280 (3%) Strand=Plus/Plus Query 153059 ATTCCCGACTAAACGCGATCTTCTGGCTGGTATCGTTTCTAAACA-TATGGCGCGTAACC 153117 |||||| || | ||||| || ||||| || || || | ||||| |||| ||||| | | Sbjct 27112 ATTCCC-ACACAGCGCGACCTGCTGGCGGGGATTGTAGCGAAACACTATG-CGCGTCAGC 27169 Query 153118 ATATTCTACC--GAAACATATTGTTGCGGCGCATGATTCCGGTGATATTCATTATCACGA 153175 ||||||| || | || | || || || || || ||| || |||||||||||||| Sbjct 27170 ATATTCTGCCTCGTGACGTGGTGCTG--GCCCACGAGCGCGGCGAAATTCATTATCACGA 27227 Query 153176 TCTGGATTACAGCCC-TTTCACCCCATACACTAACTGCTGTCTTGTTGACCTGAAAGGCA 153234 ||| || ||| || ||| ||| || | |||||| || | ||||| ||||||| Sbjct 27228 TCTCGACTACTCACCGTTTTTCCCGATGTTC-AACTGCATGCTCATCGACCTCAAAGGCA 27286 Query 153235 TGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATCGGTG 153294 |||| | || || || ||||| ||||| || ||||| |||| || || ||| Sbjct 27287 TGTTGAATAAAGGTTTTAAAATGGGCAACGCGGAAATCGATACGCCGAAGTCCATCTCCA 27346 Query 153295 TTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTGC 153334 || || || | | ||| ||||| | ||| ||| |||| Sbjct 27347 CCGCGACCGCCGTCACGGCACAGATTATCGCTCAGGTTGC 27386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557097237351360