Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq2788 311 1e-79 seq38357 114 1e-20 seq6040 87.8 2e-12 >seq2788 Length=136445 Score = 311 bits (344), Expect = 1e-79 Identities = 383/518 (74%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 41146 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 41205 |||||||| |||||| | || ||||| || || || || |||||| | ||| || | Sbjct 19671 CCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTG 19612 Query 41206 ATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAA 41262 ||||| | || || |||| || | ||||| || ||| || ||||||||| Sbjct 19611 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATCGTGAAA 19555 Query 41263 TATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCA 41322 || | || || || || |||||||| ||||||| || | ||| || || ||||| Sbjct 19554 TACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGC 19495 Query 41323 AAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAG 41382 || || || ||||||||| ||||||| ||| ||||||||||| || ||| | ||| Sbjct 19494 CCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 19435 Query 41383 ACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTAT 41442 |||||||||||||| || || ||||| ||||| || || ||||| || ||||||| || Sbjct 19434 ACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 19375 Query 41443 CCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGAA 41502 ||||| ||||| || |||||||||| |||||||||||||||||| |||||||| |||||| Sbjct 19374 CCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAA 19315 Query 41503 GAAAACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTTGATGTATAAGCGT 41562 | ||||| |||||||| ||||||| ||||| ||| | ||| | |||||||| ||||| Sbjct 19314 GGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGT 19255 Query 41563 TTAATCAATAACGATTACATCACTCTGTTCAGCC---CTGACGTTGCGAATGATCGCCTC 41619 | | || || |||||||||||||||||| |||||| ||| | |||| Sbjct 19254 CTGGTTAAAGGCGGCGACATCACTCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 19201 Query 41620 TATGACGCGTTCTATCAAGCGGATCAGACTGAGTTTGA 41657 || |||||||||| || || |||||| ||||| || Sbjct 19200 TACGACGCGTTCT-TC--GCCGATCAGGACGAGTTCGA 19166 >seq38357 Length=36386 Score = 114 bits (126), Expect = 1e-20 Identities = 211/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 154801 AACGAGAACGCAAACAAAGAC-GCACGGGTATTCCCTACACAGCGTGATTTGCTGGCGGG 154859 || || ||||| || || ||| ||| | |||||| |||||||| || |||||||||| Sbjct 27082 AATGAAAACGCCAATAAGGACAGCAAAGTCATTCCC-ACACAGCGCGACCTGCTGGCGGG 27140 Query 154860 TATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCA 154919 ||||||||||| || | || ||| | ||||| || || | | || || || Sbjct 27141 GATTGTAGCGAAACACTATGCGCGTCAGCATATTCTGCCTCGTGACGTGGTGCTGGCCCA 27200 Query 154920 TGACTCCGGCGACATCCATTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAA 154979 || |||||| || |||||||||||||| ||||| ||||| ||| || Sbjct 27201 CGAGCGCGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTCAA 27260 Query 154980 CTGCTGTCTGGTTGACCTGAAAGGTATGCTTGAGAACGGTTTCAAGATGGGTAACGCGGA 155039 |||| || | ||||| ||||| ||| | | || ||||| || ||||| |||||||| Sbjct 27261 CTGCATGCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGGA 27320 Query 155040 CATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACA 155099 || || |||| || || ||| || ||||| ||| ||| ||||| | ||| || Sbjct 27321 AATCGATACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTCA 27380 Query 155100 GATTGCC 155106 | ||||| Sbjct 27381 GGTTGCC 27387 >seq6040 Length=129903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 49780 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCGA 49839 |||||| |||||| | ||||||||||| | ||||||||||||| ||| ||||||| | Sbjct 118275 CGGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCACTGGTTCAA 118334 Query 49840 ATCCAGCAGGGGCCACCAAAT 49860 ||||| |||||||||||||| Sbjct 118335 GTCCAGTAGGGGCCACCAAAT 118355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564610555903680