Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq2788 165 9e-36 >seq2788 Length=136445 Score = 165 bits (182), Expect = 9e-36 Identities = 339/498 (68%), Gaps = 12/498 (2%) Strand=Plus/Plus Query 142879 CGGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAGGTTATTCAG 142938 ||| || ||||||||||||| | ||| ||||||| | |||||| || || | Sbjct 19219 CGGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGAT 19278 Query 142939 CTGGACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAG 142998 ||| || || |||||||| || | | |||||| ||||||| || |||||| ||||| Sbjct 19279 CTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAG 19338 Query 142999 AACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 143058 ||| || | |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19339 AACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCC 19398 Query 143059 ACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 143118 || | || || || || || |||||||| ||||| ||||| || || ||||||| || Sbjct 19399 GCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGAT 19458 Query 143119 AACACCAGTATGCTTAACTTCGCCCATACCGATTTTCG---AACCTTCGGCACGAATCAT 143175 | || ||||| |||| || ||| ||| ||| ||||| || Sbjct 19459 ACAGCCGGTATGGAATGCTTCACC---GCCGCGAATCGGGCTACCCAGCGCACGGATGCG 19515 Query 143176 GCCAACGTTGATACCGATACCTGCACGCTTACTGATA--TATTCGATGATTGAATTAGCA 143233 |||| ||||||| ||||||||||| |||| ||| | |||| | ||| | | | Sbjct 19516 GCCAGCGTTGATGCCGATACCTGCGCGCT--GTGAAACGTATTTCACGATGGCGCTGGAG 19573 Query 143234 GTCTTATTAATTGACTTCAGGGAGTCAGCCGC-TTCGATAACCACGCAGGAACTGAACTG 143292 ||| || || || | |||| ||| ||||| ||||| | ||||| || |||||||| Sbjct 19574 GTCGCGTTGATGGAGTCCAGGCTGTC-GCCGCACTCGATCAGTACGCAAGAGCTGAACTG 19632 Query 143293 TCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCGTGGGCAACGAAACCTGTCGAGTGGA 143352 | || || || | |||||| ||| || ||||| |||| |||| || || || Sbjct 19633 GCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGA 19692 Query 143353 TACTGCATCATAAAAACG 143370 || |||||||| ||||| Sbjct 19693 AACCGCATCATAGAAACG 19710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544859344760400