Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq2788 210 3e-49 seq23398 86.0 9e-12 >seq2788 Length=136445 Score = 210 bits (232), Expect = 3e-49 Identities = 299/416 (72%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115 ||||||| || ||||| || | |||||||| | || || | ||||| ||||||| | Sbjct 19263 ACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACAC 19322 Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175 | ||| || || || || || | |||||||||| ||||||||||| ||||| | | Sbjct 19323 CACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACA 19382 Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235 | || || ||||||||||| || || ||||| || ||| || ||||| |||||||||| Sbjct 19383 GGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGT 19442 Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGAT-CCC 129294 || | || |||||| |||||||| ||||||||| ||||| || | | ||| Sbjct 19443 GCTTATAGAACGGGATACAGCCGGTATGGAATGCTTCACCGCCGCGAAT-CGGGCTACCC 19501 Query 129295 TCGGCACGAATCGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATA--TAGTCAA 129352 ||||| || || |||||||||||||||| ||||| | ||| | || | | Sbjct 19502 AGCGCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGCGCT--GTGAAACGTATTTCA 19559 Query 129353 CGATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACAC 129412 |||| | || | ||| ||||||||| ||||| ||| || || |||||| || | Sbjct 19560 CGATGGCGCTGGAGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGC 19619 Query 129413 AAGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAGA 129468 ||||||| ||||| |||||||||||||| || || | | ||| || || |||||| Sbjct 19620 AAGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGA 19675 Score = 105 bits (116), Expect = 1e-17 Identities = 273/411 (66%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 127903 TAGTACAGCGATTTAACGCCATATTTTTGCGCTCTACTCATATCTTTCAGAACGACTTTC 127962 |||||||||| ||| |||||| | || | || | || |||||||| | ||| Sbjct 18032 TAGTACAGCGTTTTCACGCCAAACTTGTAGGCGGTCAGCAGGTCTTTCAGCAGCTGCTTC 18091 Query 127963 ATCGGCAGCTTATCACCCGGATAAATCGACGGGACGTAATAAGTGTTTGCACTGATCATC 128022 ||||||| ||| | | | | || ||| |||| | ||||| | ||| | Sbjct 18092 ATCGGCACCTTGCTGCTTGCAAAGCGGGATGGGTCGTAGTTGGTGTTAGACGAAATCGCC 18151 Query 128023 TGATCCACAAACTTCTGCATGATAGCGACAATATCGAGGTAACCCTTCATGCCACGT--T 128080 ||||| |||||||||||||| | | |||| | || |||||||| | ||| | Sbjct 18152 TGATCGACAAACTTCTGCATCAGACCGACCAGATGCAGGTAACCGT--------CGTTAT 18203 Query 128081 TAGCCATCGCCCA-AGCGGTTTCATACTCG-CTACCAAGCATTTCTACCTCTGGCACTAG 128138 ||| ||| |||| ||| | || |||| | || ||| | | || ||| ||||| | Sbjct 18204 TAGGCATATCCCACAGCAG-CTCGTACTGGTCTTTCAAACGCTCATA-CTCAGGCACAAC 18261 Query 128139 CTGATTAAACACACCATCTTTCGATTGCTTGGTGCTCACTAGGCCACGCGGTGGCTCGAT 128198 |||| | | ||| ||||| || |||| ||||||| |||| |||||||| || || Sbjct 18262 CTGACGCAGGATACCGTCTTTAGACGCCTTGATGCTCACGTGGCCGCGCGGTGGTTCAAT 18321 Query 128199 ACCGTTTGTGCTGTTGGTAATTTGGCTAGAACTTTCACACGGCATAAACGCGCTCAGTGT 128258 |||||| ||| ||| | ||| || ||| ||||| ||||||| | ||| ||| || Sbjct 18322 ACCGTTGGTGGCGTTTGAAATCTGCGAAGAGGTTTCAGACGGCATCAGCGCAGACAGCGT 18381 Query 128259 GTCATTGCGCATACCGTACTTTTTAATCTCGCCACGTAGCCATTCCCAATC 128309 | || |||| |||| || |||||| | | || ||| |||||| || Sbjct 18382 GGAGTTACGCAGGCCGTGCTCTTTAATGCTGGCGCGCAGCGCTTCCCAGTC 18432 >seq23398 Length=53367 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 191313 AAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTT 191372 ||| |||| |||||| ||||| ||||||||| ||||| ||| ||||||| ||| |||||| Sbjct 13841 AAAATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTT 13900 Query 191373 TCCAACTTGGCGATACCCC 191391 || |||||||||||||| Sbjct 13901 ACCG-CTTGGCGATACCCC 13918 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 191309 GTTGAAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTG 191368 ||||||| |||| |||||| ||||| ||||||||| ||||| || ||||||| || || Sbjct 13697 GTTGAAAGTGGCTGGGGTACCTGGATTCGAACCAGGGAATGCTGGTATCAAAAACCAGTG 13756 Query 191369 CCTTTCCAACTTGGCGATACCCC 191391 |||| || |||||||||||||| Sbjct 13757 CCTTACCG-CTTGGCGATACCCC 13778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719476917900480