Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq43985 109 6e-19 >seq43985 Length=4878 Score = 109 bits (120), Expect = 6e-19 Identities = 484/755 (64%), Gaps = 25/755 (3%) Strand=Plus/Minus Query 106094 TCCCACATATCAAATTGAAGCACCCCTTGG--GACGTGGGAGAACCCTCAAATGTCTCAT 106151 |||||||||||| ||||||| | |||| | ||| | ||| || ||| | || |||| Sbjct 2175 TCCCACATATCATATTGAAGTATTCCTTTGCTGACTGGTGAG--CCTTCATAAGTTTCAT 2118 Query 106152 AGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA---CATGG 106208 | | ||| | |||||||||||||||||| || || | ||||| ||| ||| | Sbjct 2117 AAGTACCATATTTTTCAGCCAATTCACAGCTAGCTTCTA---ATGCGCCATAGTACATAG 2061 Query 106209 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA 106268 ||||||| || | ||| | | || | || || ||| ||| || || | Sbjct 2060 TTTCAAAAATTTGTTGATTTAAGAGCGCAGCCTGCTCGCTCTCGTATGGGTAACG-CATA 2002 Query 106269 AA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 | || || | || || | |||||| | || | |||||||| | |||| | |||| Sbjct 2001 AGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCCAATAGGGCGATGTCTGAAATTA 1942 Query 106328 GACTTTCGCGCAGTCT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 106385 ||||| || || ||| || |||| |||| |||| |||| | |||||||| Sbjct 1941 GACTTCTTTGCC-TCGGGCAATGG-ATAATGATTTATGTCGATGATTTTATTTAGATTAC 1884 Query 106386 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 106445 || ||| || |||| | || | | | | |||| | || | ||| Sbjct 1883 GTGTTACAGTCATTGTAACCTCCTTCAAACGCTTAAAATCGTACGTTT---TTTCTGGTG 1827 Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 | ||| || | || || || ||||| ||||| ||||||||| ||||| ||| Sbjct 1826 TAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACAGCCACTTCATCTGGTGCTG 1767 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||| | ||||||||||| || || || ||||| || || | ||| | ||| | Sbjct 1766 AATACTCAACTATTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGAT 1707 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 |||||||| | || || ||||||||||| ||||| || || || || ||||| || | Sbjct 1706 TACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCG 1647 Query 106626 ACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCG 106685 | | | ||| || ||| | | ||| ||| | || || ||||| || Sbjct 1646 ATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCGCGTCCGTCTT 1587 Query 106686 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC---ACCGCGTCGGAGAGACCTG 106742 ||| || || || || | |||||| || || ||| ||| | | || || | Sbjct 1586 GCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCCATACCTCATGCAAG---CCGG 1530 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | ||||| |||||| | ||| ||||| | || | ||||| || ||||| |||| Sbjct 1529 GACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAA 1470 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 | ||||||||||| | | |||| | ||||||| Sbjct 1469 GATCTGGAATCCATAATGCATAAAATAAATCTCTA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955369121040