Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq36348 107 2e-18 >seq36348 Length=3502 Score = 107 bits (118), Expect = 2e-18 Identities = 266/398 (67%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 ||||| ||||| |||||| || || ||||| || || || || ||||| ||||| Sbjct 1645 AATGTTTGTTTAATACCAATTTCGGCGCATGGTACCAACCCAGCTTCAGCGCAAATGGCT 1586 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT-GATGGCAACATAGACATCAAAGATCT 159506 || |||||||| | | | | || | | | ||||||| ||| || || | || | Sbjct 1585 GGCATGAAAGTCGAACCCAT-ACGTCTCCTTAGCGATGGCAGCATTGATATGGCACATTT 1527 Query 159507 A---GAGAAGAAAGCA-ATCATGAATACATTTGAACTG-TCATGTATTATGATTACATAT 159561 | || ||| ||| | ||||| | ||||| |||||| | |||||||| ||| Sbjct 1526 ACGTGATAAGGCAGCGGAACATGA-----TAGGAACTTATCATGTTTGATGATTACCTAT 1472 Query 159562 CCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAG 159621 ||||||||| || |||||||| | | | | ||||| | | | || || Sbjct 1471 CCATCTACAATGGGCGTATTTGAGGAGACTGTTGCAGATATATGCGCGCTCATACACAAG 1412 Query 159622 AATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAA 159681 |||| || ||||| || | ||||| || || | |||||||| || ||||| Sbjct 1411 CATGGCGGACAGGTTTACTTAGATGGCGCTAACATGAATGCACAAGTCGGTCTCTGTCGT 1352 Query 159682 CCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCA 159741 ||| |||| || || ||||| | ||| | || || || || || || ||||| ||| Sbjct 1351 CCAGGTGATTACGGCAGCGATGTCTCACATTTGAATTTGCACAAAACTTTTTGTATACCA 1292 Query 159742 CATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| ||||| ||||| || | |||||||||||||| Sbjct 1291 CATGGTGGTGGTGGTCCCGGTATGGGTCCTATTGGTGT 1254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587029122910560