Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq2788 107 2e-18 seq6040 96.9 3e-15 >seq2788 Length=136445 Score = 107 bits (118), Expect = 2e-18 Identities = 288/433 (67%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 54187 TTCACCAGACGTTCGAACATGACGCGGTTGATCTGAATACCATAGTCGATACGGCGTTCA 54246 || |||||||| | |||| | ||||||||| | || ||||| || | || | Sbjct 19247 TTAACCAGACGCTGATACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACG 19306 Query 54247 CGGTTCTCTTCAAGACCACGGTTGTTCTTCAGGACCACAACATCATCAAATTGATAATGC 54306 ||||| |||||| |||||||||||| ||||| |||| | |||| || ||| Sbjct 19307 CGGTTGCCTTCAACACCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGC 19366 Query 54307 CAGATAGGGATATAGCAAGTT-GCTGATCCGCCACGAATACCGCCTTGAGAGCAAGACTT 54365 || || ||| || | || | | || | ||||| || | ||||| |||||||| || || Sbjct 19367 CACATCGGG-TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGA-TT 19424 Query 54366 TAATGCCCCAGTCAGATATT--TTAT-GAAAGGAACCAGGCCTGTGTGCACCATTTCACC 54422 ||| || | ||| | | | |||| ||| || | ||| || || | |||||| Sbjct 19425 TAA--CCGCCGTCTGGAAGTGCTTATAGAACGGGATACAGCCGGTATGGAATGCTTCACC 19482 Query 54423 TTTTCGGATAGGGCTACCGATGCCACGAATTGCTCCAACATCAAATCCGATCCCAGCGCG 54482 || || |||||||| | |||| || ||| | | | ||||| || ||||| Sbjct 19483 GCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGCG 19542 Query 54483 TTTGGATACATAATCAACAATACTTTTGGCTGTAGCATTGATTGAGTCCAAAGTGTCACC 54542 | || || || | || || ||| || || ||||| ||||||| |||| || Sbjct 19543 CTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGCGTTGATGGAGTCCAGGCTGTCGCC 19602 Query 54543 GGTTTTGATAAGAACACAAGAACTGAATTGGCGGGTTGGGGTACGAACGCCGGACATGAT 54602 | | ||| || || ||||| ||||| ||||| || ||||| || ||||||||||| || Sbjct 19603 GCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAAT 19662 Query 54603 GGGTGTTGGAAGA 54615 || || || ||| Sbjct 19663 TGGCGTAGGCAGA 19675 >seq6040 Length=129903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| ||||||||| |||||||||| ||||||||||||| |||||| |||||||||| Sbjct 118276 GGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCACTGGTTCAAG 118335 Query 137290 TCCAGCCAGGGTCACCAAAT 137309 ||||| ||| |||||||| Sbjct 118336 TCCAGTAGGGGCCACCAAAT 118355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501593874321360