Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq119770 165 2e-35 seq123102 163 6e-35 seq138766 158 3e-33 seq21876 140 7e-28 >seq119770 Length=1537 Score = 165 bits (182), Expect = 2e-35 Identities = 170/221 (77%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || |||||||| || || ||||||||||||||||| |||| ||||| | ||||| Sbjct 880 CAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATC 939 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || ||||| ||||| |||||||| ||||| ||||| |||||||| || Sbjct 940 TTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATC 999 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| || ||||||||||| || ||||| || | ||| | || Sbjct 1000 CTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGT 1059 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||| || || | ||||| ||||| | |||||||| ||||| Sbjct 1060 CTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTT-TGGTT 1099 >seq123102 Length=1410 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | |||||| || || || |||||||| |||||||||| | || | ||||| Sbjct 604 CAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCCATC 663 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || ||||| || | |||||||||||||| ||||||||||| || || Sbjct 664 CTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTATC 723 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||||| || |||||||| ||||| |||||| ||| ||||| | || | || Sbjct 724 TTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGATAGT 783 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||| || || | |||||| Sbjct 784 TTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || || |||||||| ||||||| | || | ||||| || | ||| || || Sbjct 848 GTAGATTCCTTCTGAATATTATAATCGGACAATGTGCGTCCATCCTCTAACTGTTTGCCA 907 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| ||||| || || |||||||| ||||||||||| || Sbjct 908 GCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATTTTAGCTTTA 967 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || |||||||| || ||| || || || | || | || ||||| ||||| Sbjct 968 ACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAA 1023 >seq138766 Length=1258 Score = 158 bits (174), Expect = 3e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||| |||||| || | || |||||||| || ||||||||||||| ||| ||||| Sbjct 857 AGCCTCAGAACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTT 798 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || ||||||||||| || ||||| |||| || || ||||| ||||| || ||| Sbjct 797 CCATCCTCAAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCT 738 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||||| |||||| ||||||| | || || ||||| || || || Sbjct 737 TTATCCTGTATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTT 678 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || ||||| || | ||||||||||| | |||||||| Sbjct 677 ATTGTTTTTCCCGTTAGTGTTTTTACGAAGATTTGCATTT 638 >seq21876 Length=2391 Score = 140 bits (154), Expect = 7e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || || || || ||||| |||||||||| |||| || | |||||||| | || Sbjct 714 TGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAG-GTACGGCCATCTTCCAATTG 656 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| ||||| || || ||||| || || || Sbjct 655 CTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 596 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || |||||||| || || ||||| ||||| | ||||| || || Sbjct 595 AGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATAGTCTTGCCAGT 536 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||||||| | |||||| Sbjct 535 CAAAGTTTTTACGAAGATTTGCAT 512 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || || ||||| || |||||||| | |||||||| ||||||||||| ||||| Sbjct 897 CCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCC 838 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || |||||||||||||| ||||| || || ||||| | || Sbjct 837 TTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTG 778 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||||||||||||||| | |||||| Sbjct 777 ATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107505028712282