Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq119770 91.5 1e-13 seq88566 87.8 1e-12 seq21876 82.4 5e-11 >seq119770 Length=1537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||||| ||| |||||| ||||| || ||||| || || | ||| |||| Sbjct 880 CAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCCATC 939 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || | ||||||||||| || || || ||||| || ||| | || | || || || || Sbjct 940 TTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTATC 999 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | | || | ||| | ||| || || | ||| ||||| Sbjct 1000 CTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGATGGT 1059 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTT 34993 || || || || || || || || || ||||| || || | ||| Sbjct 1060 CTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTTGGTTGTCTT 1104 >seq88566 Length=1870 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGT--CCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 ||| || ||||||||||| | || |||| ||||| | || ||||||||||| || ||| Sbjct 265 TTCCTTTTGAATGTTATAATCACCCAAAG--TTCGTCCGTCTTCCAGCTGTTTGCCAGCA 322 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG 34907 || |||| |||||||| ||| | || | || ||||| || |||||| |||||| Sbjct 323 AAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTGGCTTTGACA 382 Query 34908 GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | | || | || | ||||| || | || |||||||| ||||| || || || Sbjct 383 TGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTA 442 Query 34968 ACAAAGATCTGCAT 34981 || || || ||||| Sbjct 443 ACGAATATTTGCAT 456 >seq21876 Length=2391 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || ||| ||||||||||| || || || | | | || |||| ||| Sbjct 720 ACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCC 661 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || ||||| || |||| || ||||| ||| | || | ||||||||||| Sbjct 660 AATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 601 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | | || | ||| | |||||| || | ||| || || || Sbjct 600 ATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGATAGTCTTG 541 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || ||||| |||||| Sbjct 540 CCAGTCAAAGTTTTTACGAAGATTTGCATA 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324083468394288