Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq14905 159 4e-34 seq2788 123 3e-23 seq2551 96.9 4e-15 >seq14905 Length=119551 Score = 159 bits (176), Expect = 4e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 59801 TTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 59860 ||||||||||| ||| || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 59861 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 59920 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 59921 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 59980 || | |||||||| || || |||||||||| ||||| ||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 59981 TTCAATTTTAACCGTAGGTTG 60001 ||| | |||||| || || Sbjct 42279 TTCTACGCGAACCGTTGGCTG 42259 >seq2788 Length=136445 Score = 123 bits (136), Expect = 3e-23 Identities = 288/432 (67%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 138012 TGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138071 || ||||| || ||||| ||||||| ||||| |||| || || ||| ||||||| | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 138072 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138131 || || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 138132 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138191 || | || ||||| ||||| |||||||| || ||||| || || || | || || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 138192 ACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAATCATACCA 138251 || ||||| | ||||||| | |||| ||| ||||| || ||| Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 138252 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCT-TT 138310 |||| || || || || ||||| | || | |||| || | || || | || | Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTGGAGGTCGC 19578 Query 138311 GTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTGCCGAGT 138370 ||| || || | ||| || || || || | ||||| || || ||||| ||||| Sbjct 19579 GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGT 19638 Query 138371 TGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACCGC 138430 || || || ||| | |||||| || || || | ||||||| || || ||||| Sbjct 19639 CGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGC 19698 Query 138431 TTCATAAAAACG 138442 ||||| ||||| Sbjct 19699 ATCATAGAAACG 19710 >seq2551 Length=53185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 59801 TTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 59860 |||||| | | |||||||||||| | || ||||| |||||||||| || || || Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 59861 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 59920 ||| ||||| || ||||| || || || ||||| |||||||| || |||| || |||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 59921 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 59980 | | || || ||| | || || || ||||| |||||||| || ||||| || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 59981 TTCAAT 59986 ||| || Sbjct 36936 TTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529890207542640