Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq43985 381 7e-101 >seq43985 Length=4878 Score = 381 bits (422), Expect = 7e-101 Identities = 1194/1873 (64%), Gaps = 103/1873 (5%) Strand=Plus/Minus Query 47056 CATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAG 47115 |||| ||||| ||| || | || |||| | ||||| | | ||||||||||| | Sbjct 2683 CATAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACG 2624 Query 47116 ATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTG 47175 ||||||| ||||| || ||||| || | ||| |||||||| | | || | | | Sbjct 2623 ATTGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCG 2564 Query 47176 GTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATT-AGTATTTT 47232 ||||||||| |||||||| |||| || || | | ||| | |||| | || || Sbjct 2563 ATATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTT 2504 Query 47233 GAATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgtt 47292 | || || || | | || ||||||||| ||| | || | ||| | || Sbjct 2503 GTATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATT 2444 Query 47293 cagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTAC 47352 |||| | ||| | |||| ||||||||| ||||||||| || || ||||| | | Sbjct 2443 CAGTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTC 2384 Query 47353 GGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAG 47412 | |||| ||||| || || ||||| | ||||||||||| || | |||||| |||| Sbjct 2383 GATTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAG 2324 Query 47413 TTGATGCTGTAGGCATGGATGC---AACTAA---------TAAGCTAT-----------T 47449 ||||||| || ||||| | || || ||| || || || | Sbjct 2323 TTGATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCGTACGCCATATTGTTTTATTT 2264 Query 47450 TCT---------------------TACTCCATATTTTTGTATNNNNNNNNNNNNNNNNNN 47488 ||| ||| |||| || || ||| Sbjct 2263 TCTNNNNNNAAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCAATACAGA 2204 Query 47489 CCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACT 47548 ||||||||| || || | ||| || ||| | |||||||||||| |||||||| || Sbjct 2203 CCAATCCCAGAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTGCT 2144 Query 47549 TATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGC 47608 | || || || | ||| |||| ||||| ||| ||| || ||| | |||||| || || Sbjct 2143 GACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGC 2084 Query 47609 TTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGA 47668 ||| ||||| | ||| || || |||||||| |||| | |||| | || ||| Sbjct 2083 TTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGC--CTGC 2026 Query 47669 T-GAT-TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATA 47726 | | | || | || || || | ||||| || ||||| | ||||| Sbjct 2025 TCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATG 1966 Query 47727 CCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATA 47786 ||||| || | ||| | |||||| || || || || |||||||| | ||||| Sbjct 1965 CCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATG 1906 Query 47787 TCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAA 47846 || || |||||||||||| || || | || |||||| Sbjct 1905 TCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACCTCCTTCAAACGCTTAAAA 1846 Query 47847 TCAAACTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACA 47903 || || | || | | |||||||| |||| ||||| || ||||||| |||||| ||| Sbjct 1845 TCGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACAAACA 1786 Query 47904 GCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATA 47963 || || |||| ||| | ||| | | |||||| | ||||| ||||| |||||| ||| Sbjct 1785 GCCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTTAATA 1726 Query 47964 GTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023 || || | |||||| |||||| | | |||||||| |||||||| |||||| | ||| Sbjct 1725 GTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATATGGT 1666 Query 48024 GTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA-TAAC 48082 || || || |||| || |||||||| || | ||||| | | || |||| | | Sbjct 1665 GTGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACTTTC 1606 Query 48083 AGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA 48142 | |||| || || || |||||||||||||| || ||||||||||| || | Sbjct 1605 TTAT-TAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATCGCCCCA 1547 Query 48143 CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTT 48202 || | || || || ||||| | | |||||||| | |||||||| |||| | || Sbjct 1546 TACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATTAGCTTC 1487 Query 48203 TACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAG 48262 || | ||||||| | |||||| ||||| | || ||||||||| |||| ||| | Sbjct 1486 AACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGCTCTATG 1427 Query 48263 TTCTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 ||||| ||||| |||| | ||||| | ||| ||| || | |||||| |||||||||| Sbjct 1426 CTCTTCTGTGCCAGTATTTTTCTTTAAATCCAA-AAATTCAAATATATCTGCATGCCATG 1368 Query 48322 GTTCTA-----------------------------AATATATTGCCATTACACCTGGTCG 48352 |||||| ||||| Sbjct 1367 GTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCG 1308 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 |||| ||| |||||||||| ||| | || ||| || | || || |||||||| || Sbjct 1307 TTTACCACCGCCTTGATCTACATAACGTGCTACATTATTGAATACCCTCAACATTGGTAC 1248 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---AT- 48468 | |||||| ||| | ||||| || |||| ||| | || | |||| ||| || Sbjct 1247 CAAACCATTCGATGTGCCATTTGTGCCCGCAATTGCTGTACCTTTTGCTCGTATGCAATG 1188 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT----TA 48524 ||| |||| | || |||||||| || ||| || |||| |||||| | | | Sbjct 1187 TAC--ATTG--AGTCCAATACCACCAGCTGATTTGGAAATTAAAGCACATTGATGTGCTG 1132 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584 ||| | | || || || || ||| | |||| | || || ||||| || Sbjct 1131 AGGTGA----ATATGCCATCAATTGAATCGGAAACCATAGTCAAAAGGAAACATGATGAT 1076 Query 48585 ATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTC 48644 | || || || | ||| ||| | || | |||||| || ||||| |||| | Sbjct 1075 AGCTGTGGTTGTCTAGTAGCTGCAGCGAAAAGTGTTGGTGACGCATGTGTAAAATAACGT 1016 Query 48645 TCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATA 48704 ||||| | ||| || |||||||||||||||| ||| |||||| | |||||||| || Sbjct 1015 TCTGAGAGCAAATTGTATGTTTCAATAACAGCATCAATATCCTCTCCGTGTATACCAATG 956 Query 48705 GATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGA 48764 ||||| ||||||||||||| || || | ||||||||||| ||| | ||| | | | Sbjct 955 GATACGCGCATTAACATATGCTGTGGACGCTCAACAATTTTACCATTCAGTTTAAGTAAA 896 Query 48765 TATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATA 48824 || || ||||| ||||||||||||||||| || || ||| || ||||| || Sbjct 895 TAAGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAACCAAAATCACGATCATAGATT 836 Query 48825 ATTGATGAATTTA 48837 || | |||||||| Sbjct 835 ATAGCTGAATTTA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561131812747440