Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_016073.1 Length=157950 Score E Sequences producing significant alignments: (Bits) Value seq2788 102 8e-17 seq6040 91.5 1e-13 >seq2788 Length=136445 Score = 102 bits (112), Expect = 8e-17 Identities = 287/434 (66%), Gaps = 10/434 (2%) Strand=Plus/Plus Query 53887 TTCACCAGGCGCTCGAACATGACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 53946 || ||||| |||| |||| | ||| ||||| | || ||||| || | || | Sbjct 19247 TTAACCAGACGCTGATACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACG 19306 Query 53947 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 54006 ||||| |||| | |||||||||||||| ||||| | | |||| || ||| Sbjct 19307 CGGTTGCCTTCAACACCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGC 19366 Query 54007 CAGATGGGAACATAGCATGTT-GCCGATCCACCACGGATACCGCCTTGAGAGCAAGACTT 54065 || || || | | || | | || | || || || | ||||| |||||||| || || Sbjct 19367 CACATCGGGT-AGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTT 19425 Query 54066 CAGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCCC 54121 | || ||| || | ||| ||| || | ||| || ||||||| ||| | Sbjct 19426 AACCGCC---GTCTGGAAGTGCTTATAGAACGGGATACAG-CCGGTATGGAATGCTTCAC 19481 Query 54122 CTTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCGATGCCAGCAC 54181 | || || |||||||| | |||| || ||| | | || ||||| || || | Sbjct 19482 CGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGC 19541 Query 54182 GTTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTGTCAC 54241 | | ||||| || | ||||||| | | || || || || ||||||| |||| | Sbjct 19542 GCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGCGTTGATGGAGTCCAGGCTGTCGC 19601 Query 54242 CAGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATAA 54301 | | ||||| ||| |||||||||||||| || ||||||||||| ||||||||||||| Sbjct 19602 CGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAA 19661 Query 54302 TAGGTGTTGGAAGA 54315 | || || || ||| Sbjct 19662 TTGGCGTAGGCAGA 19675 >seq6040 Length=129903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 137450 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137508 |||||| ||||||||| |||||||||| ||||||||||||| |||||| |||||||||| Sbjct 118276 GGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCACTGGTTCAAG 118335 Query 137509 TCCAGCCAGGGTCACCA 137525 ||||| ||| ||||| Sbjct 118336 TCCAGTAGGGGCCACCA 118352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504433729845600