Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq104767 161 3e-35 seq31086 95.1 4e-15 >seq104767 Length=4578 Score = 161 bits (178), Expect = 3e-35 Identities = 130/151 (86%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 47251 GCGCATCTCACGCGCATCTCAACGAGAGCCTTTCAGTAAGC-GAGCCTGAGAAATGCCGT 47309 |||| || || |||||| ||| |||||| ||||||| |||| ||||||||||| ||||| Sbjct 4565 GCGCGTCGCA-GCGCATTTCATCGAGAGTCTTTCAGAAAGCTGAGCCTGAGAACAGCCGT 4507 Query 47310 TATAGGTGGCGACCTCTCTCGGGCGGCTTTTCTGTGAGA-CAGGCTCAC-TTTCTAAAAG 47367 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 4506 TATAGGTGGCGACCTCTCTCGGGCGGCTTTTCTGTGCGACCAGGCTCACTTTTCTAAAAG 4447 Query 47368 GTAAAGACGCTATGAATAATCCGTCAGTTAT 47398 |||| ||||||||| |||| |||| || Sbjct 4446 GTAA--ACGCTATGACATATCCAACAGTAAT 4418 >seq31086 Length=2822 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 12181 GCTGGAATCTCCGTTGGTCAGTACAGCGCAGCAATGCGTACGCTTCCGGCTCAGTTCACG 12240 || || || || || ||||| |||| || || |||||||| | || || ||||| ||| Sbjct 1810 GCCGGTATTTCGGTAGGTCAATACAAGGCTGCCATGCGTACTTTACCTGCCCAGTTTACG 1869 Query 12241 GATATCGCCACGCAGTTAGCTGGTGGGCAGTCGCCGTTCCTGATTCTGCTGCAACAGGGC 12300 ||||| ||||| ||||| || || || ||| |||| | ||||||||||| ||||| Sbjct 1870 GATATTGCCACACAGTTGGCGGGCGGCCAGAGTCCGTGGTTAATTCTGCTGCAGCAGGGG 1929 Query 12301 GGGCAGATTAAAGAC 12315 || |||||||| ||| Sbjct 1930 GGACAGATTAAGGAC 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158259853691576