Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_016566.1 Length=44077 Score E Sequences producing significant alignments: (Bits) Value seq139038 327 3e-85 >seq139038 Length=11747 Score = 327 bits (362), Expect = 3e-85 Identities = 885/1323 (67%), Gaps = 47/1323 (4%) Strand=Plus/Minus Query 26994 CGACGCTCGGCGACCAATTCGTCCAGTGTCCCGCGAGCCTGGATAATGTAGACGAATACT 27053 || ||||| ||||| | |||||| || || ||| |||||| || | | | || || ||| Sbjct 10843 CGGCGCTCCGCGACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACT 10784 Query 27054 GGTCGAGGGTGTCCGGCTTGCATCTGGCGAACCGGCCCGATACGTTCAACGATCTGCGAA 27113 || || || || || || || || || || ||||| || ||||| |||||||||||| Sbjct 10783 GGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAA 10724 Query 27114 AAGTGCTCAAAGTTCCAGGTATCGGAGAAGATTGCCAGGTGATGTCCGCCGTCCTGCAAG 27173 ||| || |||||||| ||||| || | ||||| || ||||||||||| |||||| Sbjct 10723 TAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAG 10664 Query 27174 TTAAGGCCGTGGCCTGCCGATGCCGGGTGTGCAAACATGATGGGGATCTCGCCCCTGTTC 27233 ||||||||||| || || |||||||| || || | || ||||||| || |||| Sbjct 10663 TTAAGGCCGTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTC 10604 Query 27234 CACGCTTCCATA-TCCTTATTGCCCTGCTTACCCTTACCCAACGCGACGCCGTGCGGAAA 27292 ||| || ||| | | |||| | ||||| || |||| || ||| | | || || Sbjct 10603 CACAGCTCGATATTGCGGGTTGCGGT-TTTACCTTTGCCCAGTGCCACGGCCTCGGGGAA 10545 Query 27293 TTTCTTCTTAAGACGTGCCAGATCATGCTTGTACTGATACGCAACGAGCAACGGCGCGCC 27352 ||||||| | ||| || | ||||| || | ||| || || | || ||||| || Sbjct 10544 TTTCTTCAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACC 10485 Query 27353 GTTCAACTCCTCCACGATACTTTCCAGCGCGTCCAGCTTCGCGTCGTGAATCTTCACCCA 27412 ||| | ||| || ||| || ||||||||||||||| ||| ||||| | |||| Sbjct 10484 GTTGAGCTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCA 10425 Query 27413 CTCGTCGGTCCGTTCGCCGTCTTCGTCCACCTTATACACAGCGCCGGATGCAAGCTGAAG 27472 || | ||| | || ||||| |||| | ||| || || ||||| || | ||| | Sbjct 10424 GTCACCTGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAA 10365 Query 27473 GCACTTAATTGTCTTCGCCGCGGCGTTCGCCGCTTCCACTGTTCCGCT-TTCCAGTTCGG 27531 ||| ||| ||||| ||||| || || | || || ||| |||| || || || |||| Sbjct 10364 GCATTTAGCCGTCTTGGCCGCCGCATTAACGGCGTCGACT-TTCCCCTCATCGAGATCGG 10306 Query 27532 CAAATAGCTCGCTT-TCAAACTGGTCATAAATCTTGCGGGCTTTCTTCGGCAGGTCCACA 27590 | ||| |||| | | | |||||| | || | ||||| ||||||| || Sbjct 10305 CCTTCAGC-AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACC 10247 Query 27591 ACAACCGG-CGTATAGATTGGCTTGTCACACCCGAAGTATTCAGCCGCATCAACGGTTAG 27649 | ||| || | || | || ||||| |||||||||| || ||| || || || || Sbjct 10246 GGACGCGGAACTACA-ATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAG 10188 Query 27650 CGACACGTCGGACAGTCGTTGTTGTAT------TTCT-TTCTCGGAGTTCTTAAGCGGGG 27702 ||| | ||||| || | | ||||| |||| |||||| | || | || Sbjct 10187 CGAGATGTCGGCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTA--TGAGG 10130 Query 27703 CGTGCTGCATCGTGAAGCTGCCAGGCTTAACAGGCTTGCTAATAAACCAGCGGTCCGTGA 27762 | | || | | |||| | ||||| |||| | || | ||||| ||| Sbjct 10129 TCTACGGCGTATT--TGCTGTC-GGCTT--TTTGCTTCGAGGTGAAATACCGGTCTTTGA 10075 Query 27763 ACGC-CTTATAGCTACTGCCGAGACGTTCGCCGCCGTCGACAAACCACGTCTGACCCCAT 27821 |||| | | || | |||| ||||| |||| | || | |||||| |||||||||| Sbjct 10074 ACGCGGTGAAAGAT-GTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAA 10016 Query 27822 AGGTCTTTCAGCCCGTTCGGTGCGGGTGTGCCAGTCAGGTT-----AAT-CCAGCGCTTG 27875 || || || |||||||| | ||||| || || || | ||| ||| || | ||| Sbjct 10015 AGATCCTTGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTG 9956 Query 27876 ACG------TGCTTATGTGCGATCGCTGCC-AGCGCACGGGCGCGCTTACTTCCCTGCTT 27928 ||| | |||||| ||||| |||| || ||||||||||| ||| ||| | Sbjct 9955 ACGCCTTTTTTCTTATGGGCGAT-TTTGCCAAGAGCACGGGCGCGTTTA-GACCCGCCAC 9898 Query 27929 GC-TTCTATAGCCTTTCAGCTTAGTGGATTCATCGGCAACCACGACCGTAAAGGGCCACT 27987 || ||| | || ||||| || ||||| |||||||| || || ||||||||||| | Sbjct 9897 GCGTTCGGAACGACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAAT 9838 Query 27988 CGTCGCCGCAATACTCAACAAGCCACTCAACTACATCATAGTTAATACAAACCACGTTAG 28047 |||| || || | || | ||| || | | ||| |||||| ||| ||||||||| Sbjct 9837 CGTCACCAAGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTAT 9778 Query 28048 CGTCGCTCTCAAGCGCAGCGATGCGGTCCTTCT-CTGGCCCAGTGCCGTCTACTACCAGC 28106 | | | | || | | ||| | || ||||||| |||||||| || || || Sbjct 9777 CCTTACCGGCGAGTAC-TTGTTGCCGATAGGCTACTGGCCCGGTGCCGTCGACGACTTGC 9719 Query 28107 AAGGCTGGGAAGCGCCATTTCTCCTGTTCCGGGGGCCATGTACCGGACGCAACGCGCAGC 28166 | || || || | |||||| || || || |||||| || ||||||||||||||||| Sbjct 9718 AGTGCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGC 9659 Query 28167 GGGGCCAGCACCAGTACGCGGTCATCCTGGTTGGAC-AGGATGCCAGTCTGGAACATTTT 28225 || || ||||| || ||||| || | ||| | | || ||| ||| |||||| | Sbjct 9658 GGCGCGAGCACAAGGACGCGATCTT--TGG--GCCCGAGTTCGCCGCTCTTGAACATCTG 9603 Query 28226 ATTCAGCGCCCACATGGTCGCGCCGGTTTTACCCGACCCCATTGTCGCCCATATATTGCA 28285 || |||||||||| || ||||||||||| || ||||| || || ||| |||||| Sbjct 9602 GTTTAGCGCCCACAGTGTGGCGCCGGTTTTGCCACTACCCATCGTGGCGTATAGATTGCA 9543 Query 28286 TCG 28288 || Sbjct 9542 GCG 9540 Score = 230 bits (254), Expect = 7e-56 Identities = 508/751 (68%), Gaps = 22/751 (3%) Strand=Plus/Minus Query 37847 TGCACCGATGCGGATCTGGATAACGAGCCGGTCGCACTATTCAGTAAGCACGACCCGATC 37906 |||||||| || ||| || || || ||| || | |||| |||| ||| |||||| Sbjct 1270 TGCACCGACGCCGATTTGATGAATGAACCGTCTGCCTTGTTCACTAAGAACGTGCCGATC 1211 Query 37907 ATCGAAGGCCTGGTCAACTTCAAATCGACCTGGTACATGGCTGGCGAGTCGAACATCGGT 37966 || || || | | |||||| |||||| |||||| ||| ||||| || ||||| || Sbjct 1210 ATTGATGGGTTTTTAAACTTCCGATCGACGTGGTACGCGGCGGGCGAATCAAACATAGGC 1151 Query 37967 AAATCGTTCTACGTGCTGGGCCAAATGGGCGCGGTTGCCGCGGGGATTCCGTTCGGCGGT 38026 |||||||||| ||| || || |||| ||| || ||||| || || || || | ||| Sbjct 1150 AAATCGTTCTTCGTCCTTGGGGCTATGGCCGCTGTCGCCGCTGGCATACCTTTTG-CGGG 1092 Query 38027 GC-GAAGGTCGTCCAGTCTCATTGCTTCTATTTCGACGCGGAAGGTGGCGAAGCCTCCAA 38085 || |||||| || | ||||||||||||||| |||| || ||||||||||| || | Sbjct 1091 GCAGAAGGTTATCAAATCTCATTGCTTCTATCTCGATGCCGAAGGTGGCGAGAGTTCTCA 1032 Query 38086 CCAGCGTAAGGAA----GCATTGCAGATCAAATATGAGCACGACCTGGACAAGCTGCACA 38141 | ||||||| || | ||||| || ||| | | ||||| | |||||||| Sbjct 1031 ----CTTAAGGAAACAGGCGCTCCAGATAAAGTATCAAGATGACCTCAATTGGCTGCACA 976 Query 38142 TTATTGACCTGCAATCACGCGGCTGGGATATCACCAGCAAATCAGGCTTGCGTGAAGTTA 38201 | | ||||| | |||||||| ||| | | || | ||| ||| || | Sbjct 975 TAGTCGACCTCTCGGTATTGGGCTGGGACATCTCAACAAAGACCGGCAAGCGCCGGGTGA 916 Query 38202 TCAGCTTCATCAACCGCACCGCTAAC----GGCGAGCCGGTTGGCCTGGTGGCGTTCGAC 38257 | || ||| ||||| || || | | || || |||||| || | || |||||| Sbjct 915 CCGACTACAT---CCGCA-CGATAGCCCGTGAAGATCCTGTTGGCATGATAGCCTTCGAC 860 Query 38258 TCACTCAACCAGACTGTTGCGCTGCGGTCCGCCGATGCAAAACCGTTCGACGAGAACAAC 38317 || || ||||||||| | || | || || |||| |||||||| ||||| | | Sbjct 859 TCTCTAAACCAGACTATGGCTTTACGCTCTTCCGACCTTCGGCCGTTCGATGAGAATAGC 800 Query 38318 GCCAGCGATATGGGCGAAGTGGTCAAAGCGCTGAAGGCCATTGCGGAAAATACAGGCGGC 38377 || |||||||| |||||||| || ||||| | || | || ||||| Sbjct 799 GCGGCAGATATGGGGGAAGTGGTACGCGCCCTGAAAGAGATCTCTATCGCAACCGGCGGA 740 Query 38378 AGTGCGGGCGTCATCCACCACCCGGCGAAAGGTGCAAACG-GCCGCAGATCTCCCCGTGG 38436 || |||||| | || |||||||| ||||| | || | | | | ||| | || || Sbjct 739 TCGGCTGGCGTCGTTCATCACCCGGCAAAAGGGGGTGGCGCGTCAC-GCTCTGCGCGCGG 681 Query 38437 GTCCGGCGCGCTGCATGGTGCTGTCGATTCTGCGTTCTTCCTGGAGCAACCGGA-CGACA 38495 |||||||||||||||||||| || ||||| || || || | ||||| || || | | | Sbjct 680 TTCCGGCGCGCTGCATGGTGCAGTGGATTCGGCCTTTTTTATCGAGCAGCCTGATCCAGA 621 Query 38496 ACCAGCCAGGTCAATTGAACCTGTATCACGAAAAGGCACGTAACGGCATCAAGCAAGCGC 38555 | || ||| || | || || ||||||||||| | ||||||||| | |||||| ||| Sbjct 620 ATCA-ATGGGTAAAATCAATCTTTATCACGAAAAATCCCGTAACGGCGTGAAGCAATCGC 562 Query 38556 CGCGCGGCTTCGTCCTGCTCAAGTGCAAGGT 38586 | | |||||| | |||| || || || || Sbjct 561 CAAGGGGCTTCCTGCTGCGAAAATGTAAAGT 531 Score = 194 bits (214), Expect = 5e-45 Identities = 498/750 (66%), Gaps = 34/750 (5%) Strand=Plus/Minus Query 31257 GGTCGTCGCTGTACTCGCCACGCGCCAGGTTTTGAGGCTGGAAGCCTTTGCCCGCCCAGC 31316 |||||||| ||| | ||||| || || || || || || |||||| || ||||| | Sbjct 7746 GGTCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATC 7687 Query 31317 GCAGCGTGCGCTTTGCGCCGCCATACTGAAGACACCCACGGCGGCGACCATCTGCGGATA 31376 || || ||||| ||||| ||||| |||||||| || ||||| || || || ||||| | Sbjct 7686 TTAGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACA 7627 Query 31377 AGCCGTTAACTAGCGGATTGTACTTAGTCGATGCCGTTGATGACGCCCCGAGGCGCATTT 31436 || | | || || ||||| || |||||||||||||| | || ||||||||||||| Sbjct 7626 GACCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTT 7567 Query 31437 C---GATAAGCGCTTTGCCTTCGTCGGGGAAGTCCGGGTCTTCAAGCAGGTCGTTAAGCG 31493 | ||||| ||| | ||||||| |||| || || ||||| |||||||| ||| Sbjct 7566 CAATGATAA-CGC--GGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTC---CAGCA 7513 Query 31494 TG---GATTTCTGCGCGTTGTGGATCGTGAACGCCGGGGCGATATCACGCAGGATTGGCA 31550 | | ||||| || || | | ||| ||||||||| | | | |||| |||| Sbjct 7512 AGACCGCCTTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCA 7453 Query 31551 GGAAGTCATTGCCTGTCAG--CTTACCGCCAAATCGCTCCCAGGCTTCTTCCTTCAATTC 31608 |||| || || || || || | ||| || || || || | || | ||| Sbjct 7452 GGAAATCCGCACCGGTAAGACCTGA--GCCGTATTTGGCCATAGCCTCGGCTTTAAGTTC 7395 Query 31609 TTCCTTATGCGCCTGCACCGCTTTGATCGCGGCGTTCGCCAGGTCAACGTCGACGTAGAA 31668 || ||||||| |||| | || | | |||| || || || |||||||| || Sbjct 7394 TTTCTTATGCTCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAA 7335 Query 31669 GCCGCGGTCGTTAATCAACTGGT------CGATGAGCAGGATTTCATCTTCCTTAGGCGA 31722 || ||||| ||||| | ||||| | | || | || ||||| ||| | || Sbjct 7334 CCCTCGGTCATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCC---GTGGA 7278 Query 31723 GTTTCCCCAGTCCGGTATGCGCCAGTAGACTTCACGCATTGCGATAATATCCAGCGCGGC 31782 ||| ||| || | || || || | |||||||| | | ||||| || || Sbjct 7277 GTT---CCATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGC 7221 Query 31783 ATAGCGCAGAAA---TTTGGCCCATTCTTCCGGGTGAGTCTCGCGAGTGTAGCGGCGGAT 31839 ||| | ||| ||| ||||||||| ||||| |||| |||||||| || || Sbjct 7220 GTAGTCTACAAAGCGTTT---CCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTAT 7164 Query 31840 TTTGTAGGTCTTAGGGGTAGGCTTACAGAATCGGTTAATCAGCGCCTTGCCTGCCTTATC 31899 ||||| ||||||| || || |||||||| || | |||| |||||| || |||||||| Sbjct 7163 CTTGTAATTCTTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATC 7104 Query 31900 CTTCGCGTGCTCTGCGTCAACGCCCAGAACCTGGCACTGCATATCGAGGCTACCGGGCAG 31959 || ||| |||| || |||| || || | ||| | | ||||| ||| |||| Sbjct 7103 TTTGGCGAGCTCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAA 7044 Query 31960 CGCGTGGCGAAAGGCCATAATCATAGTGTC 31989 ||||| || ||||| | ||| ||||| Sbjct 7043 CGCGTATCGGTAGGCCTCGACCATTGTGTC 7014 Score = 123 bits (136), Expect = 7e-24 Identities = 218/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 32687 TCATCACGGAAGCGCATACCCAGCAGACCACAGCCTAAGCCTTTGCCGTTGGTATTGTTC 32746 || |||||||| || | || || || | ||||| | |||||||||||| || | | Sbjct 5620 TCTTCACGGAAACGGACGCCGAGAAGTTCGCAGCCAAGGCCTTTGCCGTTCTCGTTATCC 5561 Query 32747 CAGGCCCAAATATCTAAGGAAACGTT-GCAATAGCAACCGGAATAGATTTCCTTCCCTTC 32805 || ||||| | || || ||||| || || ||| ||| ||| | ||| | ||||| Sbjct 5560 CATGCCCAGAAGCTTACAGAGACGTTCGCCAT-GCAGCCGCTATAAACTTCGTCACCTTC 5502 Query 32806 GATTTCGTCGCCGTCGATGGTCAGACCCTGCTCCGTCTGCTTCTCGCCTTCGGAAGTCTG 32865 ||| || || |||||| ||||| || || ||||||| ||||| ||||| Sbjct 5501 GATCTCATCATTGTCGATAGTCAGGCCAGATTCGGTCTGCTCTTCGCCCGTTGAAGTTAA 5442 Query 32866 GATGATCGGCTGTTTGAACGATTTGGCGTTGATGTACAACATGCCTTCGAATTCTTCGGT 32925 ||| ||||||| ||||| || || |||||| ||| | |||| ||||| | Sbjct 5441 GATCCTCGGCTGCTTGAAGCGCTTAGCATTGATGATCAAAGCGTCTTCAAATTCAGGACT 5382 Query 32926 TACTTCGTCGCGCTCGTCACCGTCGCGAACTGCGCATTCCTTAGAATCCTGGGCGTAGTG 32985 | ||| ||||||| |||||||||||| || ||| || ||||| ||||| |||| || Sbjct 5381 TGGTTCTTCGCGCTGGTCACCGTCGCGCACACAGCACTCTTTAGAGTCCTGTCCGTAATG 5322 Query 32986 GCGGTCCATCCACTT 33000 |||||| | ||| || Sbjct 5321 GCGGTCAAACCATTT 5307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140692109021828