Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq2788 553 3e-152 seq6040 89.7 9e-13 seq7931 86.0 1e-11 >seq2788 Length=136445 Score = 553 bits (612), Expect = 3e-152 Identities = 798/1119 (71%), Gaps = 24/1119 (2%) Strand=Plus/Plus Query 207830 GAAATCACCGAACTCGGCAGTATCTACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGA 207889 ||| |||| | ||| ||| || | || || ||||||||||| ||||| ||||| Sbjct 16768 GAAGTCACTCAGGTCGTCAGCATTCATCTCAGAATCGATCTGACCCACCAGATAAGAGCT 16827 Query 207890 AACTTCTACTTCCTGAGGAGCAACCTGAACGTTGTCAGTTACCAGCCATGAGTTAATCCA 207949 ||||| |||||||| || |||||||| |||||||||| |||||||| | ||| ||||| Sbjct 16828 CACTTCAACTTCCTGCGGCGCAACCTGTACGTTGTCAGACACCAGCCACGCGTTGATCCA 16887 Query 207950 TGGAATTGGGTTAGAGTTGGTTTTGAATGGAAGATCCAAACCGATCGCCTGCATACGGAT 208009 ||| || ||||| ||| || ||||| || | || ||| | |||||||||||||| Sbjct 16888 TGGGATCGGGTTTGAGCGAGTCTTGAACGGTGCAGTCAGACCCACGGCCTGCATACGGAT 16947 Query 208010 GTTGGTAATGTACTCAACATACTGGCAGAGGATCTCTTTGTTCAGACCGATCATTGAACC 208069 |||||| ||||| || | |||||||| || || ||||||||||| |||||||| || || Sbjct 16948 GTTGGTGATGTATTCGATGTACTGGCAAAGAATGTCTTTGTTCAGGCCGATCATCGAGCC 17007 Query 208070 ATCTTTGAACAGATAGTCAGCCCACTCTTTTTCTTGCTGAGCGG-TAGCAACGAACATGT 208128 || ||| ||||| || ||||| ||||| ||||||| |||| ||| ||||||| || Sbjct 17008 GTCGCGGAAAAGATATTCTGCCCAGTCTTTCTCTTGCTCTGCGGCCAGC-ACGAACAGGT 17066 Query 208129 CGTATGACTCTTGACGACACTCTGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAG 208188 | || |||||| |||||| || || ||||| || || ||||| ||| | Sbjct 17067 CATAACACTCTTTCTCGCACTCTTTGGCGATGATGGCCATTTCCGGGTCATCGGCACCGG 17126 Query 208189 AGTTCATCAGGTTGATGATGTGCTGAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGA 208248 || || |||||| | ||||||||| || || ||| || |||||||| || |||| Sbjct 17127 AGCGCAGCAGGTTCAGCGCGTGCTGAGTCCCGGTCAGGTGGAGCGCTTCGTCGCGGGCGA 17186 Query 208249 TCATTTTGATGATCTTAGCGTTACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGC 208308 | | |||||||| || || |||||||||||||||| ||||| || || || ||||| | Sbjct 17187 TAAGCTTGATGATTTTTGCATTACCTTCCATCAGCTCGCGTTCTGCGAAGGCAAATGAAC 17246 Query 208309 AAGCGAAGGATACGTAGAAACGAATAGCTTCAAGTGAGTTGATAGATTGCAGAGCCAGGT 208368 | |||||| ||||||||||| | ||||| || | |||| ||| ||| | Sbjct 17247 AGGCGAAGCTGACGTAGAAACGCACGGCTTCCAGCGCATTGACGCTCATCAGGCACAGAT 17306 Query 208369 ACAGTGCTTTCTTAATAGCACGAAGATTAACATTAACCTTCTCGCCATTGAC----TACG 208424 | ||| ||||| | | | || || || |||| | | ||||||||| | || Sbjct 17307 AGAGTTTCTTCTTCAGCTCGTGCAGGTTCACCACAACCGTTTTGCCATTGACCTGATGCG 17366 Query 208425 T--GGTCACCCAGACCCAGGTAATAGTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGT 208482 | |||||||| ||||| |||||| | || ||| | ||||| |||||||| Sbjct 17367 TACCTTCACCCAG---CAGGTGATAGTA---GCTGGTCATCTCGATCAGCGAGTCGTAGT 17420 Query 208483 AATGGGAAACAGATG----CAGCACGTTTCTTGATATGTTCGTTATCTACAACGTCATCA 208538 || | ||||| ||||| || ||| | |||||| || | || ||| Sbjct 17421 AA----CCAGAGATGTCCTTCGCACGCTTGAGGATCTCTTCGTTGGTGACGATATCGTCA 17476 Query 208539 AAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCTACGACTGTGG 208598 || || | || |||||||| ||||| || | || || || || || || |||| Sbjct 17477 AACACCAGTGACGGATCGTTGACGATATTACGAATAATATGCGTGTACGAGCGTGAGTGG 17536 Query 208599 ATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATC 208658 || || || ||||| ||||||||||| |||| || || |||||||| || ||| | | Sbjct 17537 ATAGTCTCGGAGAACGCCCAGGTCTCAACCCAGGTCTCAAGCTCTGGAATGGAGATCAGC 17596 Query 208659 GGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTC 208718 || |||| || ||||| || | ||||||||| || |||||||| || |||||||| ||| Sbjct 17597 GGCAGTAGCGCCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCGTCTGATACTTC 17656 Query 208719 AGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATGTAGTCAATACGGTCA 208778 ||||| || | ||| | |||||| || || || || | | || | |||| ||||||||| Sbjct 17657 AGGTTGCTCAGGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGAAGTCGATACGGTCA 17716 Query 208779 CGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTC 208838 |||| || || |||||||| |||||||||||||| || || || || || || ||||| Sbjct 17717 CGGGCAACGTCAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTTCGATCAGTTTT 17776 Query 208839 TCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGACGTTTTGACCCAGGAAC 208898 || ||||| ||||| ||||| |||||| | || | ||||| || ||||| | |||| Sbjct 17777 TCGAAGATTTCATATTTCTGCTGGTCGAAGCGCGCCACGTTAACCGACTGACCGAAGAAC 17836 Query 208899 ATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAAA 208937 || | || | | || |||||||||||||| ||||| Sbjct 17837 ATCGGCTCGAGCAGCTGGTCGTTTTTGTTTTG--TGAAA 17873 >seq6040 Length=129903 Score = 89.7 bits (98), Expect = 9e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 16034 AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCT 16093 ||||| |||||||||| | ||||||||| | ||||||||||||||||||| | |||| Sbjct 118357 AAATT-TGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCT 118299 Query 16094 CTAACCGTCTGAGCTACGGGGCCG 16117 |||||| |||||||| ||||||| Sbjct 118298 CTAACCAACTGAGCTAAGGGGCCG 118275 >seq7931 Length=164496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 ||||| ||||||||||| |||||||||||||| | ||||||||||| |||||||| Sbjct 108954 AATGGTACGCCCTACAGGGCTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 108895 Query 16179 CC-ACTGAGCTAAGAGCGC 16196 || ||||||||||| |||| Sbjct 108894 CCAACTGAGCTAAGGGCGC 108876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 909510849600720