Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_016763.1 Length=43221 Score E Sequences producing significant alignments: (Bits) Value seq139038 156 1e-33 >seq139038 Length=11747 Score = 156 bits (172), Expect = 1e-33 Identities = 381/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 233 TGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAGTGCTCC 292 ||||| ||||| | || || || || ||||| || ||||| | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 293 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGCCCGCCGTCCTGTAAATTCAAACC 351 | |||||| | | | | ||||| ||||||| || |||||||| || || || | || Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 352 ATGGCCCGCCGATG-CAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCAAGATT 410 || |||| || || | ||||| | | | || ||| | ||| ||||||| | Sbjct 10655 GTG-CCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCT 10597 Query 411 CCATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCGCCTA 469 | || | || || | || |||||| | | ||| |||| ||||||| | | Sbjct 10596 CGATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTC 10538 Query 470 AGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTGCAAC 529 || ||||| || | || || | | ||||||||| | ||| |||||||| | | | Sbjct 10537 AGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGC 10478 Query 530 TCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTCTTTC 589 || || ||| ||||| | ||| || || ||| ||| || | ||||||||| Sbjct 10477 TCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCT 10418 Query 590 GTTGCTTCACCATCCGGCCCCGACACATACACGGCACCGGAAGCAATCTGCAAGCACTTA 649 || | ||||| || | | | |||||| |||||||||||||| ||||||||||| ||| Sbjct 10417 GTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTA 10358 Query 650 GCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTC-TCCAGTTCCGCGAATAA 708 ||||| || || || || ||| | || || |||| ||| ||| || || || || | Sbjct 10357 GCCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCAG 10299 Query 709 CTCCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAACCGG 768 | || | |||||||| ||| ||| ||||||| ||||||| | | | ||| Sbjct 10298 CAGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGG 10239 Query 769 TACAATAACCGGTGCTTCACAACCGAA 795 || | || || ||||||||||||| Sbjct 10238 AACTACAATCGCCTCTTCACAACCGAA 10212 Score = 145 bits (160), Expect = 2e-30 Identities = 675/1061 (64%), Gaps = 53/1061 (5%) Strand=Plus/Minus Query 4469 CCGGCGCGGAACGTATCAAGCGCGGTTTCTTCGCCCGCCAGCCATGCAAGCCCACGGCCT 4528 ||||| ||||| || || ||| | | ||||| || || |||||||| | |||||| || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 4529 TCGACGTTAGAGTAATCCGCAACAACAAACTTACGCCCGGCTTCCGGG---ATAATGCAG 4585 || ||||||| ||| || |||||||| | ||| | ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCATC---GCTTCCGCTGCAATAATACAA 7862 Query 4586 CTTCGGACGGTAGACGCTGTTAGCTTGGCCACATCAAAACGGCGGTGTGCACGGCCTTTA 4645 |||||| || || || ||||||||||| | ||| | | | | || ||| | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 4646 AGTAACGCGGCAATACCC----------CTATCCAGTT----CA-------------TCG 4678 |||| | |||| | || | | || || ||| Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 4679 TCGTGATAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAAT 4738 ||||| |||||||| || || || || ||||| ||||| ||| ||| ||||| | | Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 4739 GTTCGCTTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCT 4798 |||||||| || || || ||||| || ||||| ||||| ||| | || | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 4799 AACAGCAACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATA 4858 | | ||| |||||| |||||||| || || || || ||||| ||||| || || Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 4859 ATAGTGCGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTC 4918 ||| |||||| ||||| || | ||| ||| | |||| || | | |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTC 7502 Query 4919 TGTGCGTTGTGTATGCGGTGCGCTGGCGCTAGCTCCTGTAAAATAGGCAAGAAGTCTTTG 4978 || || || ||| | |||||| || ||||| | | || |||| ||| || Sbjct 7501 TGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCA 7442 Query 4979 CCGGTTAGTGAACC---GCCATATTTACGTTGGGCTTCTTCCTGTAACTCTTCTTTATGG 5035 ||||| || ||| ||| ||||| || || | | | |||| ||||| Sbjct 7441 CCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATG- 7386 Query 5036 CGCGTGACTG-CTTCAATCGCTGCTTCCGCCAATGCCAC-ATCAACCTTAAATCCTCGGT 5093 | | || || | | | ||| || | ||| | ||| || | ||| ||||||| Sbjct 7385 CTCCTGTATGGCCTGTACCGC-GCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGT 7327 Query 5094 CATTAATCACCTGGTCTAAGTGC-AGCACGCGGTCTTCGAACTCAG---AATTCCCCCAC 5149 ||||||| | |||||| ||| | | | |||| ||| | ||| | | |||| | Sbjct 7326 CATTAATGATCTGGTC-AAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCC---AT 7271 Query 5150 TTAGGCATTTTCTTATACACTTCACGCATGGACGTAATGTCGCTTTTTGCGTATGCAATA 5209 | |||| | | | | |||||||| || || || |||| |||||| | | | Sbjct 7270 GTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACA 7211 Query 5210 AATTCTGCCCACTCTTTTGGGTGGGTATCGGCAGTATAACGTCGAATCTTATAGTTCTTG 5269 || | ||| |||| ||||| || | || || || || ||||| || ||||| Sbjct 7210 AAGCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTA 7151 Query 5270 GGCGTAGGCTTACTGAATCGCTGTATCAGCGCCTTACCACGTTTATCCTTAGCCATGCTT 5329 ||||| || |||| ||| ||||| |||| ||||||||| ||||| || || | ||| Sbjct 7150 GGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGA-GCTC 7092 Query 5330 G-CGTCAATGTTTAAAACCTCACACAGCGCGGCCAGTGAACCCGGGAGGGCATGTCGGAA 5388 || || ||||| || || || || | || |||||||| | || | |||| | Sbjct 7091 CACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTA 7032 Query 5389 CGCGACTATCATAGTGTCTATAATGTTTTCTACCAGGAGTTCGAATCCCCAGCAATGCTT 5448 || | | ||| ||||| || |||| || ||| ||| ||||| || | | Sbjct 7031 GGCCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCCCAACAGTTCGA 6972 Query 5449 AATAACTGGTCGGTCGAACATAAGGAAGTTTTGGCCTACCA 5489 | || |||| ||||||||| | |||||||||||| |||| Sbjct 6971 CAGCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137957431910116