Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq2788 260 1e-64 >seq2788 Length=136445 Score = 260 bits (288), Expect = 1e-64 Identities = 284/377 (75%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 118117 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118176 ||| |||||||| || | |||||||| | ||| ||||| || ||||| ||||| || Sbjct 17467 GATATCGTCAAACACCAGTGACGGATCGTTGACGATATTACGAATAATATGCGTGTACGA 17526 Query 118177 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGTGTC 118236 ||| |||||||||||||| ||||||||| ||||| ||||| || || || || Sbjct 17527 GCGTGAGTGGATAGTCTCGGAGAACGCCCAGGTCTCAACCCAGGTCTCAAGCTCTGGAAT 17586 Query 118237 GGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 118296 ||| | | ||| || || | | || || | ||||||||| | || ||||| || | Sbjct 17587 GGAGATCAGCGGCAGTAGCGCCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCGT 17646 Query 118297 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGTC 118356 ||| |||||||||||||| | ||| ||||| || || || ||||||||| | | |||| Sbjct 17647 CTGATACTTCAGGTTGCTCAGGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGAAGTC 17706 Query 118357 GATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCTC 118416 |||||||||||||| |||| |||||||||||||||||||||||| | ||| ||||| || Sbjct 17707 GATACGGTCACGGGCAACGTCAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTTC 17766 Query 118417 GATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCTC 118476 |||||| || ||||| | | | |||||||||||| |||| | ||||| | || Sbjct 17767 GATCAGTTTTTCGAAGATTTCATATTTCTGCTGGTCGAAGCGCGCCACGTTAACCGACTG 17826 Query 118477 GCCGAGGAACATCGGCT 118493 |||| ||||||||||| Sbjct 17827 ACCGAAGAACATCGGCT 17843 Score = 134 bits (148), Expect = 1e-26 Identities = 316/474 (67%), Gaps = 21/474 (4%) Strand=Plus/Plus Query 119741 GTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGGGCCTGTTTAGGGTCA 119800 || ||||||||||| || | |||||||||||||| ||||| || |||||| Sbjct 18956 GTTGGCAGCGCGATTTCAAGGCACAGGTTGGACTGGCGAACCGGTGCAATAGCGGGGTCA 19015 Query 119801 AACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAAATACGACCAGTTTGTGAA 119860 |||||||| | ||| || ||||||||||||||||||| ||| ||||| || ||| | Sbjct 19016 AACGGGCTATGGGTGTTGCAGTGGTCAACGTGCTGAATATAGATACGGCCGGTTGACGCG 19075 Query 119861 CGCTCCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATAGACTTCTTCGCCACGGAA 119920 || |||||| | | ||||| || | || | || ||| || ||| Sbjct 19076 CGTTCCTGCATCATCAGGGAGAACAGCTCAACGGCTTTCACCTTCTGCTT-GC----GAA 19130 Query 119921 GGATCTGCTTCCAGTTCCTC------GTAAAGCTGTTGGAATTTCTCCTGATCAGAGAAG 119974 | | | | ||| | || | ||| || | | ||| | |||||||| | |||| Sbjct 19131 TGCTTT-CGTCCTGCTCGTATTGAGTGTACAGACGCTCGAACTCGTCCTGATCGGCGAAG 19189 Query 119975 AAATATTCGTACAGCTTACCGCCAGCCACGTT---CGGATGGAACAACGTGATGTTCTTG 120031 || |||||||| ||||| ||||| ||| ||||| ||||||| | Sbjct 19190 AACGCGTCGTACAG------GCCAGGCACGTCAGACGGGCTGAACAGAGTGATGTCGCCG 19243 Query 120032 CCCTGCTGGAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGTAGTCCACATGGCGA 120091 || | || || ||| | ||| ||||||||||| | ||||||||||| || ||| Sbjct 19244 CCTTTAACCAGACGCTGATACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGA 19303 Query 120092 GCACGAGTGCTCTCGGTGCCACGGTTGTTCTTCAGAACGATCAGGCTCTCAAAATCCCAG 120151 | || ||| || ||||||||||| |||||||| | |||||| |||| ||| | Sbjct 19304 ACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGG 19363 Query 120152 TGCCACATCGGGTAGAAATAGTTAGCCGATGCCTTACGGACGCCGCCCTGAGAG 120205 ||||||||||||||||| | | || | | || ||||||||||||||| Sbjct 19364 TGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAG 19417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 294/444 (66%), Gaps = 21/444 (5%) Strand=Plus/Plus Query 117559 GTTGATCCAAGGGATTGGGTTCTTGGTCGGTTTCCCGATCAGTTCACCAAGGCCAACCGC 117618 ||||||||| ||||| ||||| || || | | || | || || || || || || Sbjct 16879 GTTGATCCATGGGATCGGGTT--TGAGCGAGT-CTTGAACGGTGCAGTCAGACCCACGGC 16935 Query 117619 CCGCATACGTTGATCT--GTGATGTAGTCGATGTAACCGTCCAGCATACCTTTGTTCAGA 117676 | ||||||| ||| | |||||||| |||||||| | || || |||||||||| Sbjct 16936 CTGCATACG--GATGTTGGTGATGTATTCGATGTACTGGCAAAGAATGTCTTTGTTCAGG 16993 Query 117677 CCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCACCGATGC 117735 ||||||||||| ||||| ||| || | |||||| |||||||||| ||| | ||| Sbjct 16994 CCGATCATCGAGCCGTCGCGGAAAAGATATTCTGCCC-AGTCTTTCTCTTGCTC---TGC 17049 Query 117736 GTCGATAAAGCCCTG-TCGTGCC--TCTTCGTAGCAATCCTCTGCCACACGAGCAAA--- 117789 | | | | | | | || | | |||| | ||| || | || | || | Sbjct 17050 GGCCAGCACGAACAGGTCATAACACTCTTTCTCGCACTCTTTGGCGATGATGGCCATTTC 17109 Query 117790 CAGATCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTGCCGGACAAATG 117849 | | ||| ||| |||| ||| |||||| | |||||| |||| || || Sbjct 17110 CGGGTCA---TCGGCACCGGAGCGCAGCAGGTTCAGCGCGTGCTGAGTCCCGGTCAGGTG 17166 Query 117850 CAAGGCTTCATCACGGGCAATCAGTTCAATAATGTTGGTGTTGCCCAGCATTACCCCGCG 117909 | ||||| || ||||| || || | || || || | || || ||| | | |||| Sbjct 17167 GAGCGCTTCGTCGCGGGCGATAAGCTTGATGATTTTTGCATTACCTTCCATCAGCTCGCG 17226 Query 117910 CTCGCCGAACGCAAATGAGCAGGCGAAGCTCACGTAGAAGCGGATCGCTTCCAGTGCGTT 117969 || |||| |||||||| ||||||||||| |||||||| || | |||||||| || || Sbjct 17227 TTCTGCGAAGGCAAATGAACAGGCGAAGCTGACGTAGAAACGCACGGCTTCCAGCGCATT 17286 Query 117970 GATATTGTGCAGGCACAGGTACAG 117993 || | ||||||||| || || Sbjct 17287 GACGCTCATCAGGCACAGATAGAG 17310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476715589931280