Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq2788 262 3e-65 >seq2788 Length=136445 Score = 262 bits (290), Expect = 3e-65 Identities = 675/1023 (66%), Gaps = 9/1023 (1%) Strand=Plus/Minus Query 70585 GATTTAGATAAGATCCATAAAGTAATCGCATGGGCTGCAGAGGGACTTGAAAATGTCTCA 70644 ||| | ||||| ||||| ||| |||| ||||| || || || || |||| || ||| Sbjct 20241 GATCTTGATAAAATCCACCGAGTCATCGACTGGGCAGCGGAAGGTCTCCAAAACGTATCA 20182 Query 70645 GTATCTCAAGTTGAATTGAAATCTCATATCCAATTTTATGAAGGTATGAAGACAGAAGAT 70704 || || ||||| ||| || || || ||||| ||||| || || || ||||| | ||| Sbjct 20181 GTTTCCCAAGTAGAACTGCGCTCCCACATCCAGTTTTACGATGGGATTAAGACGGCTGAT 20122 Query 70705 ATTCACGAAATAATCATTAAAGCAGCAGCAGATTTAATATCGGTTGACACTCCTGATTAT 70764 ||||| |||| ||||| ||||| || ||||| | || || ||| | ||||| ||| Sbjct 20121 ATTCATGAAACCATCATCAAAGCTGCCGCAGACCTGATCTCTAAAGACGCGCCTGACTAT 20062 Query 70765 CAGTATCTCTCATCTCGTTTAGCCGTATTTCATTTACGTAAACAAGCCTATGGTGATTTT 70824 |||||||| | | || | || | || || | |||||| ||||||| || | || Sbjct 20061 CAGTATCTGGCCGCGCGCCTGGCTATTTTCCACCTGCGTAAAAAAGCCTACGGCCAGTTC 20002 Query 70825 GTACCACCTCGCCTTATCAACCATAT-AGCTAAGTTGACAGATAGTGGTCATTATGATAA 70883 | ||| ||| || | |||| | ||| || | | | || | || | || ||||| Sbjct 20001 GAACCGCCTGCACTGTTTGACCAGGTCAGCAAAATGGTC-GAAATGGGCAAATACGATAA 19943 Query 70884 AGAAATTCTTGAAGATTTTACCATTGGTGAAATTGAAGAATTAGGTAATTACATTCAGCA 70943 | | | || ||||| | ||| || || | || | | | | || || | || Sbjct 19942 ACATCTGCTGGAAGACTACACCCGTGAAGAGTTCGAGCAGATGGACAGTTTTATCGATCA 19883 Query 70944 TGACCGTGATATGAATATTGCCTATGCAGGTATTAAGCAATTAATCGGTAAGTATTTGGT 71003 ||||| ||||| | ||||||| | ||||||| | || || ||| |||| Sbjct 19882 CTGGCGTGACATGAACTTCTCCTATGCCGCGGTTAAGCAGCTGGAAGGCAAATATCTGGT 19823 Query 71004 TCAGGACAGAGTTAATGGTATTATCTTTGAAACCCCTCAAATGCTTTATATGCTTGTTGG 71063 ||| || | || | || |||| ||||| | | || | | || || || || | Sbjct 19822 GCAGAACCGCGTCAGCGGCCAAATCTATGAAAGCGCCCAGTTCTTGTACATTCTGGTCGC 19763 Query 71064 TATGTGTTTATACTCTAAAAAGTATAGCGGCAA-AGTT-CGTATGAATTACATCAAAGAG 71121 ||| | | ||| | || | || || ||| || | |||||||| Sbjct 19762 CGCGTGCCTGTTCTCC-----GGCTACCCGCGTGAGACGCGTCTGGACTACATCAAGCGT 19708 Query 71122 TGGTATGATGCAACAAGTACATTTGAGCTATCATTACCAACACCTATTATGGGTGGTGTA 71181 | |||||||| || || || | || | || || || |||||| || || Sbjct 19707 TTCTATGATGCGGTTTCAACCTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGGCGTG 19648 Query 71182 CGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAGATTGACAGTGGCGATAGCCTAGAT 71241 || || || || | || || || ||| ||| ||| || | ||||| ||||| || Sbjct 19647 CGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCTGGAC 19588 Query 71242 TCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTATGTATCCAAACGTGCAGGTATCGGT 71301 || || || || | || || | || || || || || || | || ||||||||||| Sbjct 19587 TCCATCAACGCGACCTCCAGCGCCATCGTGAAATACGTTTCACAGCGCGCAGGTATCGGC 19528 Query 71302 ATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCTATACGCAATGGTGAAGCAGTTCAT 71361 ||||| | |||| || ||||| | || || || || ||| ||||||||| | ||| Sbjct 19527 ATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCATTCCAT 19468 Query 71362 ACTGGTTTAATACCATTCTTAAAGCATTTCCAAACAGCAGTCAAATCTTGCTCTCAGGGA 71421 || || | || || |||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 19467 ACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTCTCAGGGC 19408 Query 71422 GGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCTATGTGGCATTTAGAAGTTGAAAGC 71481 ||| | || || |||||||| || ||||||||| |||||||| | |||||||||||| Sbjct 19407 GGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGTTGAAAGC 19348 Query 71482 CTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGATAACCGTGTACGTCATTTAGACTAT 71541 || | || ||||||| ||| |||||||||| ||||| || ||||| | ||||| Sbjct 19347 CTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACATGGACTAC 19288 Query 71542 GCTGTGCAATTCAATAAGCTTATGTACCAACGATTGATTACAGGTGGCAATATTACATTG 71601 | ||||| |||| || || ||||| || || || ||| ||| ||| | || || || Sbjct 19287 GGCGTGCAGATCAACAAACTGATGTATCAGCGTCTGGTTAAAGGCGGCGACATCACTCTG 19228 Query 71602 TTC 71604 ||| Sbjct 19227 TTC 19225 Score = 132 bits (146), Expect = 3e-26 Identities = 291/430 (68%), Gaps = 16/430 (4%) Strand=Plus/Minus Query 73346 GGTGAAGGTACTTATCAGGTCAATGGTGAAGAGTATGTAGTCTCAAAGCGTAAGCTTAAA 73405 ||||||||||| ||||||||||||| || | ||| || || |||| || Sbjct 17376 GGTGAAGGTACGCATCAGGTCAATGGCAAAACGGTTGTGGTGAACCTGCACGAGCTGAAG 17317 Query 73406 GAGCGACTTTATCT-TGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATCCGCTTTTACGT 73464 || ||| ||||| |||| || || |||||||| | ||||| | || || ||||| Sbjct 17316 AAGAAACTCTATCTGTGCCTGATGAGC-GTCAATGCGCTGGAAGCCGTGCGTTTCTACGT 17258 Query 73465 AAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAGAT 73524 || ||||| ||||||||||| || |||||||| ||||| | ||||||||||| || || Sbjct 17257 CAGCTTCGCCTGTTCATTTGCCTTCGCAGAACGCGAGCTGATGGAAGGTAATGCAAAAAT 17198 Query 73525 TATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAGATGATTCTGAA 73584 || || || |||||||| || ||||| | ||| | || || |||||| |||| Sbjct 17197 CATCAAGCTTATCGCCCGCGACGAAGCGCTCCACCTGACCGGGACTCAGCACGCGCTGA- 17139 Query 73585 TAACTG--GCGAACTGGCAAGGATGATCCTGAAATGCAAGAGATTGCAGAAGA---CCTT 73639 | ||| ||| | || ||||| || |||||| || || |||| | Sbjct 17138 -ACCTGCTGCGCTCCGGTGCCGATGACCCGGAAATGGCCATCATCGCCAAAGAGTGCGAG 17080 Query 73640 AAAGATGTAAGTCTTAAGA--TCTTTATGGATGTTGTTGAAGAAGAAAAGCAATGGGCAA 73697 |||| ||| ||| || | || || | | || |||| || | |||||| Sbjct 17079 AAAG-----AGTGTTATGACCTGTTCGTGCTGGCCGCAGAGCAAGAGAAAGACTGGGCAG 17025 Query 73698 AATATCTATTCAAAGATGGGTCAATGATCGGTCTTAATGAAGAAATACTTTGCCAGTACG 73757 ||||||| ||| || || || |||||||| || || |||| || |||||||||||| Sbjct 17024 AATATCTTTTCCGCGACGGCTCGATGATCGGCCTGAACAAAGACATTCTTTGCCAGTACA 16965 Query 73758 TTGAGTACAT 73767 | || ||||| Sbjct 16964 TCGAATACAT 16955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335101565177782