Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq43481 96.9 1e-15 seq1602 80.6 8e-11 >seq43481 Length=83004 Score = 96.9 bits (106), Expect = 1e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 11720 CGCTTGCCAGAACGTATGAAAGAAGAGATTCGGCGCATGGCTGAAATGGATGGTATTTCT 11779 |||||||| ||| | ||||||||||| ||| ||| ||||||| ||||||||| ||||| Sbjct 64890 CGCTTGCCCGAAAGAATGAAAGAAGAAATTATGCGAATGGCTGCAATGGATGGAATTTCC 64949 Query 11780 ATCAATTCTGCAATTGTGCAGCGTTTGGCAAAGAGTCTGCGAGAGGAA 11827 |||||||| ||||| || |||| ||||| ||||| |||| ||| Sbjct 64950 ATCAATTCAGCAATCGTTAAGCGATTGGCTCGTTGTCTGAGAGAAGAA 64997 >seq1602 Length=1372 Score = 80.6 bits (88), Expect = 8e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 38303 AATAAAAACATCTCAGAATGGAGTATCCCCCAAAATGAGGGAATACCCCTCAAAACAGGG 38362 ||||||||| ||||||||||| | ||| ||||| |||||| | |||||||| |||| Sbjct 754 AATAAAAACGTCTCAGAATGGGACACCCCTCAAAACGAGGGAGAATCCCTCAAATTAGGG 813 Query 38363 GATAAAACATCCCTCAATTTGAGG 38386 |||||| ||||||||| ||| || Sbjct 814 GATAAAGAATCCCTCAAATTGGGG 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156790284215656