Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq88566 143 2e-29 seq123102 141 7e-29 seq119770 140 3e-28 seq21876 140 3e-28 seq138766 127 2e-24 seq77695 100 2e-16 >seq88566 Length=1870 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| || |||||||| | |||||||| ||||| || || ||||| | Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || |||| || || || ||||| || ||||| || ||||| || ||| Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| || ||| ||| ||| | ||| || || | ||| || Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACC 409 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| ||||| || || | ||||| || ||||| ||||| Sbjct 410 TCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCAT 456 >seq123102 Length=1410 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||| || ||||| ||||| || |||||||||| | || | | Sbjct 601 ACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTGCGTCC 660 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || ||||| ||||| || || ||||||||||| || Sbjct 661 ATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGAATGCCTTCCTT 720 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||||| ||| || | || | || || || | ||| ||||| | |||| Sbjct 721 ATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAACTTCCAATGTGAT 780 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || ||||| |||||||| ||||| Sbjct 781 AGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 125 bits (138), Expect = 6e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| |||||||| | |||||||| || || ||||| ||||||| | || | || Sbjct 830 CGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGACAATGTGCGTCCA 889 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || || || || || || || |||||||| |||||||| || || || ||||||||| Sbjct 890 TCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTA 949 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||| ||| |||| | || ||||| | || || || | ||||| Sbjct 950 TCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATG 1009 Query 101435 GTTTTGCCGGTTAA 101448 ||||| || || || Sbjct 1010 GTTTTTCCCGTCAA 1023 >seq119770 Length=1537 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || | ||||| || ||||||||||| |||||||| |||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| || || || || || | ||| |||||||| || ||| Sbjct 926 AGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 985 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| ||||| || ||| ||| |||| | |||||||| | ||||| Sbjct 986 ATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACC 1045 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || ||||| |||| ||||| || || || ||||| Sbjct 1046 TCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 >seq21876 Length=2391 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | || |||||||| || ||||| || || || |||||||||| Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||||||||| || || || || |||||||| ||||| || ||| Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || || |||| | |||||||||| || ||| Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || ||||||||||| || || ||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| |||||| || || || || ||||| |||||||| || ||||| ||||| || Sbjct 894 TCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 835 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| || ||| || | || | |||||| || | || ||||| | ||||| Sbjct 834 TCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCTAAAGTGATA 775 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||||||||| || || ||||| Sbjct 774 GTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||||| || ||||| || || || || ||||| |||||||| || | Sbjct 510 CCACCACGTAGACGTAGGACCAAATGGAGCGTTGACTCCTTTTGGATATTGTAGTCAGAC 451 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||||||||| || || || || |||||||| ||||| || ||| Sbjct 450 AAGGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGCTGCTGATCTGGGGGA 391 Query 101363 ATGCCTTCTTT 101373 || || || || Sbjct 390 ATTCCCTCCTT 380 >seq138766 Length=1258 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| | ||||| ||||| |||||||||||||||| | ||||| |||| || Sbjct 849 AACAAGATGGATTGTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTC 790 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||||| ||||| |||| | ||| ||||| || ||||| || |||||||| || Sbjct 789 AAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTG 730 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| || ||| | || ||| | || || | ||||| || || || | ||||| Sbjct 729 TATTTTGGCCTTGACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTT 670 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||| |||||||| || || ||||| Sbjct 669 TCCCGTTAGTGTTTTTACGAAGATTTGCAT 640 >seq77695 Length=1756 Score = 100 bits (110), Expect = 2e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| || ||||| | ||||||||||||||||| || || ||| | ||| | Sbjct 954 CATAACCATTCGGATCACACCCATCCAAACTGTATTTATCATTTAAAAGAAGGGCCGTCT 895 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 | ||||| | |||| || ||||||||||||||| ||||||||||| || | || Sbjct 894 CCAGAGCCAATTCGGGCGTCGGAGCCCATTCTAATATTTTCTTAGCCCAATACATACGCA 835 Query 13881 TATATCCGTGCATTTTGCCTT-GCGTTTTAAGCTGTGTCTGAGC 13923 | |||| ||||||||||||| ||| |||| ||| |||| || Sbjct 834 AAAATCCATGCATTTTGCCTTCACGTATTAA-TTGTATCTGTGC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395606857459422