Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq2788 650 0.0 seq12640 98.7 7e-16 >seq2788 Length=136445 Score = 650 bits (720), Expect = 0.0 Identities = 1276/1882 (68%), Gaps = 99/1882 (5%) Strand=Plus/Minus Query 68256 ACTTCGGCTATGCCGCCACCGTGCAGCTGGCGAGCAAGTATCTCGTTCAAAACCGTGTAA 68315 ||||| ||||||||| |||||||| |||| ||||| || || ||||| || | Sbjct 19868 ACTTCTCCTATGCCGCGGTTAAGCAGCTGGAAGGCAAATATCTGGTGCAGAACCGCGTCA 19809 Query 68316 CTGGCGCTATCTACGAAGGGCCACAGCAACTCTACATGCTGGTCGGCATGTGCCTGTTCC 68375 ||| ||||| ||| | | ||| | ||||| ||||||| | |||||||||| Sbjct 19808 GCGGCCAAATCTATGAAAGCGCCCAGTTCTTGTACATTCTGGTCGCCGCGTGCCTGTTCT 19749 Query 68376 AGAATTGGGAAGATGGCTGCGCCGGTAAGACGCGTCTGGAGATGGTTAAGGGCTTCTACG 68435 |||| | | || ||||||||||||| | ||| | ||||| | Sbjct 19748 CC------------GGCTACCCGCGTGAGACGCGTCTGGACTACATCAAGCGTTTCTATG 19701 Query 68436 ATGTGACCAGTACATTCAAGTTGTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCC 68495 ||| | || |||||| | |||||||| |||||||||||| ||||||||||||||| Sbjct 19700 ATGCGGTTTCAACCTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGGCGTGCGCACCC 19641 Query 68496 CTACTCGCCAGTTCTCCAGCTGCGTGCTGATTGAA-GCTGCTGATAGTCTGAAAGGGATT 68554 | |||||||||||| | ||||| ||||| || || || || || ||| | || Sbjct 19640 CGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGC-GACAGCCTGGACTCCATC 19582 Query 68555 AGCGCTGCGTCTTCCGCAATCATCGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGC 68614 | ||| | || ||| ||| | | ||||| |||| ||||| || || || || | Sbjct 19581 AACGCGACCTCCAGCGCCATCGTGAAATACGTTTCACAGCGCGCAGGTATCGGCATCAAC 19522 Query 68615 TTTGGGCGTCTGCGTGCGCTGGGCAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGC 68674 ||| || | ||||||||||| || ||| ||| || || || ||| || ||| Sbjct 19521 GCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCATTCCATACCGGC 19462 Query 68675 GTTTTTCCATTCCTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTT 68734 | | || ||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct 19461 TGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTG 19402 Query 68735 CGCGGCGGCGCTGCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTG 68794 |||||||| ||||| || |||||| ||||| |||||| ||||||||||||| |||||| Sbjct 19401 CGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTG 19342 Query 68795 GTGCTGAAAAACAACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGACTATGGCGTG 68854 || ||||||||||||||||| |||||| |||||||||||||| | ||||| |||||| Sbjct 19341 GTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTG 19282 Query 68855 ATGATCAACCGTCTGATGTATCGCCGCCTGGTGCGCAACGAAAACATTACGCTGTTCAGC 68914 ||||||| |||||||||| || ||||| || |||| || ||||||||| Sbjct 19281 CAGATCAACAAACTGATGTATCAGCGTCTGGTTAAAGGCGGCGACATCACTCTGTTCAGC 19222 Query 68915 CCACACGATGTGCCGGGCCTGTACGACGCGTTCTTTGTTGATCAGGACAAGTTCGAAGAG 68974 || || ||||| |||||||||||||||||||| | ||||||||| ||||||| Sbjct 19221 CCGTCTGACGTGCCTGGCCTGTACGACGCGTTCTTCGCCGATCAGGACGAGTTCGAGCGT 19162 Query 68975 CTGTAC-CTGAAGTACGAAGCCGACGAGAGCATCCGTAAGAAATCTATCCCGGCCGTCGA 69033 |||||| || || ||||| ||||| ||||| || ||| | | ||||| || Sbjct 19161 CTGTACACTCAA-TACGAGCAGGACGAAAGCATTCGCAAGCAGAAGGTGAAAGCCGTTGA 19103 Query 69034 CCTGTTCTCTACGCTGATGCAGGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGT 69093 |||||||| | |||||||||| || || || || || ||| | |||||| |||| Sbjct 19102 GCTGTTCTCCCTGATGATGCAGGAACGCGCGTCAACCGGCCGTATCTATATTCAGCACGT 19043 Query 69094 CGACCACATGAACGATCACGGCGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAA 69153 |||||| ||| || || | || | || | ||||||||||| | ||||||||| Sbjct 19042 TGACCACTGCAACACCCATAGCCCGTTTGACCCCGCTATTGCACCGGTTCGCCAGTCCAA 18983 Query 69154 TCTCTGTATGGAGATCACGCTACCGACCAAGCC--------ACT---------------- 69189 || || | || ||| |||| || |||||||| | | Sbjct 18982 CCTGTGCCTTGAAATCGCGCTGCCAACCAAGCCGTTAAATGANTGAAACCGCGCGCCCAC 18923 Query 69190 ----GGCGTTCACTGAC--GATC--CGA--ACGGGGAAATCGCGCTTTGCACCCTGTCTG 69239 | |||| | |||| || | ||| | ||||||||||||||||| || ||||||| Sbjct 18922 AAAAGCCGTTAAATGACGTGAACGACGAAGAAGGGGAAATCGCGCTTTGTACGCTGTCTG 18863 Query 69240 CGTTCAACCTGGGCGCGATCCGCACGCTGGACTCACTGAAAGACGTGGCGTTTTACGCTG 69299 | |||||||| ||||| ||| | ||||| || |||| ||||| || | Sbjct 18862 CCTTCAACCTCGGCGCTATCGAAAGCCTGGATGATCTCGAAGAGCTGGCGACCCTTGCAG 18803 Query 69300 TGGCGGCACTGGACTCTCTGCTCGACTATCAGGACTACCCTA---TGGCTGCTGCAGAAA 69356 || || || ||| | |||||||| |||||||| ||||| | |||| ||| || Sbjct 18802 TGCGTGCGCTTGACGCCCTGCTCGATTATCAGGATTACCCAATCCTGGCCGCT-----AA 18748 Query 69357 TCCCGGCTAAA--GCTCGTCGTAGTCTGGGTATTGGCGTGACCAACTTTGCTTACTATCT 69414 | |||| || | || |||| |||||||||||||| | ||||| |||||| ||||| Sbjct 18747 ACGCGGCGCAATGGGCCGCCGTACGCTGGGTATTGGCGTTATCAACTATGCTTATTATCT 18688 Query 69415 GGCGAAGAACGGCTTTAACTACTCTGAC-GCTGCGGGCAACCAGCTGGTGCATGAGACCT 69473 ||| ||||||||| | ||| ||| || || | |||| ||| || | | Sbjct 18687 GGCCAAGAACGGCGTGCGTTACAGCGACGGCAGC-GCCAACGCCCTGACTCACCGCGCGT 18629 Query 69474 TCGAAGCCATTCAGTACTACCTGCTCGATGCGAGCTGCCG-ACTGGCCGAAGCGAAAGGT 69532 ||||||| ||||||||||||||||| | || || || |||||| | | ||||| Sbjct 18628 TCGAAGCGATTCAGTACTACCTGCTGAAAGC-CTCTAACGAACTGGCGCGTGAGCAAGGT 18570 Query 69533 GCATGTGACTGGTTCTCCCACACCAAATACGCACAGGGCCAGCTGCCAGTCGACCA---- 69588 || || |||||| | |||| ||| | ||||| ||||| ||||| Sbjct 18569 GCCTGCCCATGGTTCAAAGAGACCACTTACTCGCAGGGAATTCTGCCGATCGACNNNNNN 18510 Query 69589 ---------------------CTATCGCAAAACGCTGGATACCAACCCGGAGACATCTTT 69627 | |||| | | | | | | ||| | || || Sbjct 18509 NNNNNNNNNNNNNNNNNCTGCCGATCG-ACACCTATAAAAAGGAACTC-GATACGCTGAC 18452 Query 69628 CGA------GCTG-AAAATGCCGTGGGAAGAGCTGCGTGGCCGTATCCGTGAGCATGGTC 69680 ||| |||| | ||| | ||||||| |||||| | | | || ||||| || | Sbjct 18451 CGATGAGCCGCTGCACTATGAC-TGGGAAGCGCTGCGCGCCAGCATTAAAGAGCACGGCC 18393 Query 69681 TGCGTAACTCAACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGATCACCAACT 69740 |||||||||| || ||| | || | ||||||| ||| || || ||||| | ||| Sbjct 18392 TGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCTGAAACCTCTTCGCAGATTTCAAACG 18333 Query 69741 CCACCAATGGTATTGAGCCGCCCCGCGGCCCGGTATCCGTGAAGTCTTCCAAAGACGGCA 69800 ||||||| |||||||| || || ||||||| || | | ||| | || |||||||| | Sbjct 18332 CCACCAACGGTATTGAACCACCGCGCGGCCACGTGAGCATCAAGGCGTCTAAAGACGGTA 18273 Query 69801 TCGTGAAGATGGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAGTACCTGTGGG 69860 || || ||| || || || | | | ||||||||||||||||| ||||||| Sbjct 18272 TCCTGCGTCAGGTTGTGCCTGAGTATGAGCGTTTGAAAGACCAGTACGAGCTGCTGTGGG 18213 Query 69861 ATATGCCGGATAACCGCGGCTATCTGACTAAGGTGGCCATCATTCAGAAGTTCTTCGATC 69920 ||||||| ||||| ||| || ||| | ||| | | || |||||||| |||||| Sbjct 18212 ATATGCCTAATAACGACGGTTACCTGCATCTGGTCGGTCTGATGCAGAAGTTTGTCGATC 18153 Query 69921 AGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCGACAAGGTTCCAA 69980 |||| || || | ||||||||||||||||| | ||||| | || |||||| || | Sbjct 18152 AGGCGATTTCGTCTAACACCAACTACGACCCATCCCGCTTTGCAAGCAGCAAGGTGCCGA 18093 Query 69981 TGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGAAGACGCTTTATT 70040 ||| | |||||||| |||| |||||| || || || || ||||| ||||| || | Sbjct 18092 TGAAGCAGCTGCTGAAAGACCTGCTGACCGCCTACAAGTTTGGCGTGAAAACGCTGTACT 18033 Query 70041 ACCACAACACGCGTGATGGCGC 70062 |||| ||||| || || ||||| Sbjct 18032 ACCAGAACACCCGCGACGGCGC 18011 Score = 275 bits (304), Expect = 4e-69 Identities = 307/408 (75%), Gaps = 13/408 (3%) Strand=Plus/Minus Query 70309 GAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTACCGT 70368 || || |||||| |||| ||||| || ||||| || |||| ||| ||||| || || | Sbjct 17844 GAGCCGATGTTCTTCGGTCAGTCGGTTAACGTGGCGCGCTTCGACCAGCAGAAATA---T 17788 Query 70369 GA---CTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTC 70425 || ||||||||| ||||| ||||| || || || ||||||||||| || |||||||| Sbjct 17787 GAAATCTTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCGGAAGAAGTT 17728 Query 70426 GACATTACCACTGACCGCATCGACTTCAATACCAAG--CTGCAAGAGCACGAGCGCCATA 70483 ||| || || |||||| ||||||||| || | |||| ||||| || || | Sbjct 17727 GACGTTGCCCGTGACCGTATCGACTTC-----CAGGGTCTGCCGGAGCATGAAAAACACA 17673 Query 70484 TTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTA 70543 ||||||||||||||||| || ||||||||| |||| || ||||||| || || |||| Sbjct 17672 TTTTCCTGAGCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTAGCCCTA 17613 Query 70544 ACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGT 70603 ||| | || |||||||||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 17612 ACGTGGCGCTACTGCCGCTGATCTCCATTCCAGAGCTTGAGACCTGGGTTGAGACCTGGG 17553 Query 70604 CGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATG 70663 ||||||||||||| || ||| ||| || ||||| ||||| || ||| || | | Sbjct 17552 CGTTCTCCGAGACTATCCACTCACGCTCGTACACGCATATTATTCGTAATATCGTCAACG 17493 Query 70664 ACCCTAGCATCGTTTTCGACGGCATCGTCACGGACGAAGAGATCATCA 70711 | || | || || |||| |||||||| ||||||||||| ||| Sbjct 17492 ATCCGTCACTGGTGTTTGACGATATCGTCACCAACGAAGAGATCCTCA 17445 >seq12640 Length=196862 Score = 98.7 bits (108), Expect = 7e-16 Identities = 203/293 (69%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGA-GCGTCTGAAGTA 79607 || |||||||| || |||||| |||||| ||| | | || || || ||| || | Sbjct 195422 ACAACCAACAACCGCATGGAGCTGATGGCCGCTATCGTCGCACTCGAAGCG-CTAACCGC 195480 Query 79608 CCCCTGCAACGTGATCCT--GCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTC 79665 ||||||| |||||| || ||| |||||||||||||| | | || || || | Sbjct 195481 CCCCTGCGACGTGACGCTCAGCA--CCGACAGCCAGTATGTTCGCCAGGGAATAACCCAG 195538 Query 79666 TGGATGAAAGGCTGGAAGCGTAACG--GATGGATCACGTCTGAGAAGAAGCCAGTCAAAA 79723 ||||| | ||||||| |||| | |||| || |||| ||||| || || |||| Sbjct 195539 TGGATCCACAACTGGAAGA--AACGTGGCTGGAAAACCGCTGACAAGAAACCGGTGAAAA 195596 Query 79724 ACGTCGATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAG 79782 |||||||| | ||| |||| || ||||| || ||| || |||| | ||||| | Sbjct 195597 ACGTCGATTTATGGCAACGGCTGGATGCCGCGATTCAGACG-CACACCCTGAACTGGATG 195655 Query 79783 TGGGTTAAAGGTCATGCCGGTCATCGCGAGAACGAAATGTGTGACCGTCTGGC 79835 ||||| || || || || || |||| ||||||||| |||||| ||||| Sbjct 195656 TGGGTCAAGGGCCACGCGGGCCATCCTGAGAACGAACGCTGTGACGAGCTGGC 195708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329872042291560