Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq14905 140 4e-28 seq2788 132 5e-26 >seq14905 Length=119551 Score = 140 bits (154), Expect = 4e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || || || || || ||||||||||| |||||||||| || || |||||||| | || Sbjct 42280 GGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGAGACGCTCGAAGATGCGATAAAA 42339 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| || || ||||| ||| |||| |||||||| || || || || || || |||||| Sbjct 42340 CATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTCGGGGTACGCCGTGCGTTTTAAC 42399 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 || |||| ||||||||||||| ||||| ||| |||| || || || |||| || ||| Sbjct 42400 TCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq2788 Length=136445 Score = 132 bits (146), Expect = 5e-26 Identities = 291/429 (68%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 131909 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 131967 ||||| |||||||| ||||| || | ||||| |||| ||||||| ||||||||| | || Sbjct 19710 CGTTTCTATGATGCGGTTTCAAC-CTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGG 19652 Query 131968 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 132027 | || || || |||||||||||| ||| ||| | || || ||| || | Sbjct 19651 CGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCT 19592 Query 132028 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 132086 | || || ||| || || ||| || | | |||| |||| | || || |||| Sbjct 19591 GGACTCCATCAACGCGACCTCCAGCGCCA-TCGTGAAATACGTTTCACAGCGCGCAGGTA 19533 Query 132087 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 132144 | || ||||||| ||| | ||||| ||| ||| | ||||||| | Sbjct 19532 TCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCAT 19473 Query 132145 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 132204 || ||||| || ||| || |||| || || ||||| || || || ||||| || || Sbjct 19472 TC--CATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTC 19415 Query 132205 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 132264 ||| || || | || || |||||||| || || || |||||||||||| | ||||| Sbjct 19414 TCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGT 19355 Query 132265 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 132324 || | ||| | ||||||||||| ||| || || || | ||||| |||| || || Sbjct 19354 TGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACAT 19295 Query 132325 GGACTACGG 132333 ||||||||| Sbjct 19294 GGACTACGG 19286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/187 (71%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 133105 CTGTGACTGGGAAGAACTTCGAGCTGAACTCAAAGAACATGGAATTCGTAACTCAACGTT 133164 || ||||||||||| || || || | ||||| || || | |||||||| ||| | Sbjct 18436 CTATGACTGGGAAGCGCTGCGCGCCAGCATTAAAGAGCACGGCCTGCGTAACTCCACGCT 18377 Query 133165 GTCTGCACTCATGCCTTGTGAGTCAAGCAGT---CAAGTATCAAACTCTACAAACGGGAT 133221 |||||| || ||||| | ||| || | | || | |||||| | || ||||| || Sbjct 18376 GTCTGCGCTGATGCCGTCTGA---AACCTCTTCGCAGATTTCAAACGCCACCAACGGTAT 18320 Query 133222 TGAGCCCCCGCGCGGTCCAGTAAGTATTAAAGAATCTAAAGAAGGCAACTTCCGTCAGGT 133281 ||| || |||||||| | || || || || | |||||||| || | | | |||||||| Sbjct 18319 TGAACCACCGCGCGGCCACGTGAGCATCAAGGCGTCTAAAGACGGTATCCTGCGTCAGGT 18260 Query 133282 TGTTCCT 133288 ||| ||| Sbjct 18259 TGTGCCT 18253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540236992742880