Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq15821 105 5e-18 seq138766 102 6e-17 seq21876 98.7 8e-16 seq119770 89.7 4e-13 >seq15821 Length=5389 Score = 105 bits (116), Expect = 5e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 9066 GGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAA 9125 ||||||||| || | || || || ||||| ||||| | || || ||||| |||| Sbjct 3715 GGGATAAAAAATGCGCTCGCATATGAATTGTGCAATGCGATCGCCACGCTTCACTTCAAA 3774 Query 9126 GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185 ||| || ||||||||||| || || || || | ||||| | ||||||||||||| Sbjct 3775 GTCGACATCCGAATGATTGAAGAGTACTACACCTAAATTACCACGATAATCCTCATCGAC 3834 Query 9186 CACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCG 9245 ||||||||||| || || ||||||| ||| || || | || || || || || | || Sbjct 3835 TACACCAGCACCAACATCTATGAAGTTCTTTACAGCCAAACCTGAACGAGGAGCTACACG 3894 Query 9246 ACCGTA 9251 |||||| Sbjct 3895 ACCGTA 3900 >seq138766 Length=1258 Score = 102 bits (112), Expect = 6e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || ||||||||||| || || ||| | || || | ||||||||| ||||| Sbjct 831 CTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCAGCAAA 772 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTG--TTTTACA 48692 ||||||| ||| ||||| | |||| ||||| || || || | ||||| || ||| Sbjct 771 GATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATC-CT-GTATTTTGGCCTTGACA 714 Query 48693 GAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTT 48752 | ||| || || | ||||||||||| || || ||||||||||| | |||||| Sbjct 713 TTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTTTTT 654 Query 48753 ACAAAAATCTGCAT 48766 || || || ||||| Sbjct 653 ACGAAGATTTGCAT 640 >seq21876 Length=2391 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| |||| |||||||| ||||| || || ||||| |||||||| || Sbjct 738 CCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGAC 679 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||| ||||| ||||| || || | ||||| ||||| | |||| Sbjct 678 AAGGTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGA 619 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | || |||| ||| || Sbjct 618 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACT 559 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||||||||||||| || || ||||| Sbjct 558 TCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq119770 Length=1537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| |||| || || || ||||||||||||||||| || ||| Sbjct 866 CCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGAT 925 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || || || || ||||| || || || || |||||||| | ||| Sbjct 926 AGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 985 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || |||||| ||| ||| | | | || || | ||||||| Sbjct 986 ATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACC 1045 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | ||||| || ||||| ||||| Sbjct 1046 TCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCAT 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380292054333858