Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2788 297 2e-75 seq38357 113 5e-20 seq6040 96.9 4e-15 >seq2788 Length=136445 Score = 297 bits (328), Expect = 2e-75 Identities = 380/518 (73%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 40720 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 40779 |||||||| |||||| | || ||||| || || || || |||||| | ||| || | Sbjct 19671 CCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTG 19612 Query 40780 ATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAG 40836 ||||| | || || |||| || | ||||| || ||| || |||||||| Sbjct 19611 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATCGTGAAA 19555 Query 40837 TATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCA 40896 || | || || || || ||||| || ||||||| || | ||| || || ||||| Sbjct 19554 TACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGC 19495 Query 40897 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAG 40956 || || || ||||||||| | ||||| ||| ||||||||||| || ||| | ||| Sbjct 19494 CCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 19435 Query 40957 ACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTAT 41016 ||||||||||||||||| || |||||||| || || || ||||| || ||||||| || Sbjct 19434 ACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 19375 Query 41017 CCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAA 41076 ||||| ||||| || |||||||||| |||| ||||||||||||| |||||||| |||||| Sbjct 19374 CCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAA 19315 Query 41077 GAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGT 41136 | ||||| |||||||| |||| || ||||| ||| | ||| | |||||||| ||||| Sbjct 19314 GGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGT 19255 Query 41137 TTAATCAATAACGATTACATCACTCTGTTCAGCC---CTGACGTTGCGAACGATCGCCTG 41193 | | || || |||||||||||||||||| |||||| ||| | ||||| Sbjct 19254 CTGGTTAAAGGCGGCGACATCACTCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 19201 Query 41194 TATGACGCGTTCTATCAAGCGGATCAGACTGAGTTTGA 41231 || |||||||||| || || |||||| ||||| || Sbjct 19200 TACGACGCGTTCT-TC--GCCGATCAGGACGAGTTCGA 19166 >seq38357 Length=36386 Score = 113 bits (124), Expect = 5e-20 Identities = 213/308 (69%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 153311 AACGAGAACGCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGG 153369 || || ||||| || || ||| |||| | |||||| ||||||||||| |||||||| || Sbjct 27082 AATGAAAACGCCAATAAGGACAGCAAAGTCATTCCC-ACACAGCGCGACCTGCTGGCGGG 27140 Query 153370 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGCA 153429 || ||||||||||||| || ||| | || |||||||| || | || || || Sbjct 27141 GATTGTAGCGAAACACTATGCGCGTCAGCATATTCTGCCTCGTGACGTGGTGCTGGCCCA 27200 Query 153430 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCG-TTCACGCCATACACAA 153488 || || || || |||||||| ||||| || ||| ||| || | | || | | Sbjct 27201 CGAGCGCGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTC-A 27259 Query 153489 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 153548 ||||| || | || | ||||| ||| || ||| || || || ||||| ||||| | Sbjct 27260 ACTGCATGCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGG 27319 Query 153549 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 153608 | ||||| | ||||| || ||| ||||| || | | ||||||||| | ||| | Sbjct 27320 AAATCGATACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTC 27379 Query 153609 AGATTGCC 153616 || ||||| Sbjct 27380 AGGTTGCC 27387 Score = 86.0 bits (94), Expect = 7e-12 Identities = 202/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 153772 CGACGCGTTTCAGTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAAC 153831 |||||| |||||||| ||||| || || || || || || || || ||||| || || Sbjct 27581 CGACGCCTTTCAGTCGCTGGAATATGAGGTTAATACGCTTCACACCGCCAACGGCCAGAC 27640 Query 153832 CCCGTTTGTTACAATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCA 153888 |||||||| || || || ||| |||| | || | || || || |||| || Sbjct 27641 GCCGTTTGTGACCTTTGGCTTTGGT-CTGGGTA--CCTGTTGGCAAGCGCGGCTGATTCA 27697 Query 153889 GAAAGCGATTCTGAAAAACCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATT 153948 ||| |||||||| |||||||| ||| | || ||| | ||| || | || || Sbjct 27698 AAAATCGATTCTGCGCAACCGTATCGCCGGATTAGGAAAAAATCGTAAAACGGCCGTGTT 27757 Query 153949 CCCGAAACTGGTTATGTTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGCAACTA 154008 || ||||||||| | ||| | || || || | | | | | || ||| || Sbjct 27758 TCCCAAACTGGTTTTCGCCATTCGCGACGGCATAAATCATAAGGCGGCCGACGCCAATTA 27817 Query 154009 TGACATCAAACAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATCATTAG 154068 |||||||||||| || ||||| |||||||| || || ||||| || ||||| ||| Sbjct 27818 TGACATCAAACAGCTCGCCCTCGAATGTGCCAGCAAGCGTATGTATCCCGATATTCTTAA 27877 Query 154069 TT 154070 || Sbjct 27878 TT 27879 >seq6040 Length=129903 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 49479 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAA 49538 |||||| |||||| | ||||||||||| | ||||||||||||| ||| ||||||||| Sbjct 118275 CGGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCACTGGTTCAA 118334 Query 49539 GTCCAGCAGGGGCCACCAAAT 49559 |||||| |||||||||||||| Sbjct 118335 GTCCAGTAGGGGCCACCAAAT 118355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569098741518480