Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq14905 154 2e-32 seq2788 123 3e-23 seq2551 91.5 2e-13 >seq14905 Length=119551 Score = 154 bits (170), Expect = 2e-32 Identities = 144/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 61398 TTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 61457 ||||| |||| ||||| ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 61458 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61517 |||||| || || || || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 61518 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61577 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 61578 TTC 61580 ||| Sbjct 42279 TTC 42277 >seq2788 Length=136445 Score = 123 bits (136), Expect = 3e-23 Identities = 286/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 138538 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138597 || ||||| || ||||| ||||| | ||||| |||| || || ||| ||||||| | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 138598 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138657 || || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 138658 CGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138717 || | || ||||| ||||| |||||||| || ||||| || || || | || || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 138718 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCA 138777 || |||||| | ||||||| || |||| ||| ||||| || ||| Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 138778 ACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTG 138837 |||| || || || || ||||| | || | |||| || || | ||| | | | Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGCG 19579 Query 138838 TTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTC 138897 ||||| || | | || || ||| || | || || || || ||||| |||||| Sbjct 19580 TTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTC 19639 Query 138898 GGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACTGCT 138957 || || || || | |||||| || || || | ||||||| || || || || Sbjct 19640 GGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGCA 19699 Query 138958 TCATAAAAACG 138968 ||||| ||||| Sbjct 19700 TCATAGAAACG 19710 >seq2551 Length=53185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 61411 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61470 || |||||||| | || ||||| |||||||||| || || ||||| ||||| || Sbjct 37103 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTACC 37044 Query 61471 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61530 ||||| || || || ||||| |||||||| || |||| || |||| | | || || Sbjct 37043 GCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTCC 36984 Query 61531 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 61580 ||| | || || || |||||||||||||| || ||||| ||||| Sbjct 36983 AGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTC 36934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534608392704960