Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019419.2 Length=43457 Score E Sequences producing significant alignments: (Bits) Value seq139038 271 2e-68 >seq139038 Length=11747 Score = 271 bits (300), Expect = 2e-68 Identities = 908/1379 (66%), Gaps = 52/1379 (4%) Strand=Plus/Plus Query 16739 CGATGCAATATATGGGCGACAATGGGGTCGGGTAAAACTGGCGCGACCATGTGGGCGCTG 16798 || |||||| ||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 9540 CGCTGCAATCTATACGCCACGATGGGTAGTGGCAAAACCGGCGCCACACTGTGGGCGCTA 9599 Query 16799 AATAAAATGTTCCAGACCGGCATCCT--GTCCCACCAGGAGGACCGCGTACTGGTGCTGG 16856 || | |||||| ||| |||| || | |||| | || ||||| || ||||| | Sbjct 9600 AACCAGATGTTCAAGAGCGGCGAACTCGGGCCCA-----AAGATCGCGTCCTTGTGCTCG 9654 Query 16857 CCCCTCTACGCGTTGCATCCGGCACATGGCCCCCGGAACAGGAAAAATGGCGCTTCCCCG 16916 | || || |||||||| |||| || |||||| || || || |||||| | || |||| Sbjct 9655 CGCCGCTGCGCGTTGCGTCCGCGACGTGGCCCGGAGAGCAAGACAAATGGGGGTTTCCCG 9714 Query 16917 CCTTGCTGGTAGTAGATGGCACTGGGTCGG-AGAAGGACCGCATCGCTGCGCTTGAGAGC 16975 | ||| || || || ||||| ||| | | || | ||| | | || | | Sbjct 9715 CACTGCAAGTCGTCGACGGCACCGGGCCAGTAGCCTATCGGCAACAA-GTACTCGCCGGT 9773 Query 16976 GACGCTAACGTGGTTTGTATTAACTATGATGTAGTTGAGTGGCTCGTCGAGTATTGCGGC 17035 | | ||||||||| ||| |||||| ||| | | || ||| | || | || || Sbjct 9774 AAGGATAACGTGGTGTGTTGTAACTACGATATCGCAGAATGGTTGGTGCAATACCTTGGT 9833 Query 17036 GACGAGTGGCCCTTTACGGTCGTGGTTGCCGATGAATCGACTAAGCTGAAAGGCTATCGA 17095 ||||| ||||||||||| || || |||||||| |||||||| ||||| || | ||| Sbjct 9834 GACGATTGGCCCTTTACCGTTGTCGTTGCCGACGAATCGACAAAGCTTAAGTCGTTCCGA 9893 Query 17096 A-GCAAGCAGGGAAGTAAGCGCGCCCGTGCGCT-GGCAGCGATCGCACATAAGCA----- 17148 | || | ||| ||| ||||||||||| || |||| ||||| |||||| | Sbjct 9894 ACGCGTGGCGGGTC-TAAACGCGCCCGTGCTCTTGGCAAA-ATCGCCCATAAGAAAAAAG 9951 Query 17149 -CGTCAAGCGCTGG-ATT-----AACCTGACCGGCACACCCGCGCCAAACGGGCTGAAAG 17201 |||||| | || ||| ||| | || || || ||||| |||||||||| || | Sbjct 9952 GCGTCAAAGTCCGGTATTGGTGGAACTTAACGGGTACGCCCGCTACAAACGGGCTCAAGG 10011 Query 17202 ACCTATGGGGCCAGACGTGGTTTGTCGACGGGGGCGAACGCCTCGGCAGTAGTTATAAGG 17261 | || ||||| |||| |||||| | || | |||| || || |||| || | | Sbjct 10012 ATCTTTGGGGTCAGAACTGGTTTATAGATGCTGGCGCGCGTCTGGGCACATCTTTCACCG 10071 Query 17262 CATTCACGGATCGCTGGTTTATTAGCAAGCCTGTTAAGCCTGGCAGCTTCACTATGCAGC 17321 | |||| || || | || | |||| ||||| | |||| | || || | Sbjct 10072 CGTTCAAAGACCGGTATTTCACCTCGAAGCAAA--AAGCC-GACAGCA--AATACGCCGT 10126 Query 17322 ACGCCCCGCTTAAGAACTCCGAGAA-AGAA-ATC-CA-ACAACGCC---TGTCCGACGTG 17374 | || | || | |||||| |||| | | || ||| || || ||||| | Sbjct 10127 AGACCTCA--TACCCATGCCGAGATCAGAACAGCGCATACATCGTGCATTGGCCGACATC 10184 Query 17375 TCGCTAACAGTTGACGCGGCTGAATACTTCGGGTGTGACAAGCCAATCTACACGCCGGTT 17434 ||||| || || |||||| || |||||||||| ||||| || | || ||| | Sbjct 10185 TCGCTGACGGTAGACGCGTCTAAATACTTCGGTTGTGAAGAGGCGATTGTAGTTCCGCGT 10244 Query 17435 GTAGTGGACCTGCCGAAGAAAGCCCGCAAGATTTATGACCAGTTCG--AAGCGGAGCTAT 17492 || ||||||| ||||| | || | |||||| | | | |||| | || Sbjct 10245 CCGGTCTACCTGCCCCGTAAAGCGCAAAAAGTCTATGACGATATGGTGAAGCTG--CTGA 10302 Query 17493 TTGCGGAACTGGAA-AGCGGAACAGTGGAGGCGGCTAACGCTGCGTCGAAGACTATTAAG 17551 || || || || || |||| ||| || || | ||| || ||| | ||||| ||| Sbjct 10303 AGGCCGATCTCGATGAGGGGAA-AGTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAA 10361 Query 17552 TGCCTTCAGCTTGCTTCCGGGGCAGTGTATAAAGTCGACGAAGACGGCGAGCGCACCGAC 17611 ||| | ||| | |||||||| || || ||| ||||| ||||| |||| || | Sbjct 10362 TGCTTGCAGATAGCTTCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCCGACAGGT 10421 Query 17612 GAATGGGTGAAAATCCACGACGCTAAACTGGACGCGCTGGAAAGTATCGTGGAGGAGTTG 17671 || |||| | || || ||| || ||||||||||| || ||| || ||| | Sbjct 10422 GACTGGGAGCTTATTCATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTC 10481 Query 17672 AACGGCGCACCGTTGCTCGTCGCATACCAATATAAGCATGATCTGGCGCGTCTCAAGAAG 17731 ||||| || || || | || || || | ||| ||||| | || || || |||| Sbjct 10482 AACGGTGCGCCACTGTTAGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAG 10541 Query 17732 AAATTCCCGCACGGAGTAGCGATGGGTAAGGGTACGCAAGGAAATAAGGATATGGAAGCG 17791 |||||||| | | || || |||| || |||| | || |||| || | Sbjct 10542 AAATTCCCCGAGGCCGTGGCACTGGGCAAAGGTAAAACCGCAACCCGCAATATCGAGCTG 10601 Query 17792 TGGAACAGGGGTGAGATCCCCATCATGTTCGCACACCCGGC-ATCGGCGGGTCACGGCCT 17850 |||||| || ||||||| || | || || |||||||| | || |||| |||||||| Sbjct 10602 TGGAACCAAGGGAAGATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGG-CACGGCCT 10660 Query 17851 TAACTTGCAGGATGGCGGACACCACCTTGCTATTTTTTCAGACACCTGGAACTATGAGCA 17910 ||||||||| || ||||||||||| || || ||||| || || ||||||| || | Sbjct 10661 TAACTTGCAAGACGGCGGACACCATCTGGCCGTTTTTAGTGATACGTGGAACTTGGAATA 10720 Query 17911 CTTTGCGCAGATCGTGGAGCGTATCGGGCCAGTTCGCCAGATGCAAGCCGGACACCCTCG 17970 || | |||||||||| || || || |||||||| || || || || || || || || Sbjct 10721 CTATTCGCAGATCGTCGAACGAATAGGGCCAGTGCGACAACATCAGGCGGGCCATCCACG 10780 Query 17971 TCCAGTATTCGTCTACATTATCCAGGCGCGCGGCACGCTGGATGAACTGGTCGCCGAGCG 18030 ||||| || || | | | || ||||| ||| ||||| || ||| | ||||| ||||| Sbjct 10781 GCCAGTTTTTGTGTTCTTGATACAGGCTGCCGGTACGCTCGACGAAGTCGTCGCGGAGCG 10840 Query 18031 TCGTGAC-AGTAAGCGAGACA-TTCAGGACGATTTAATGGAATACAT-GAAAGCTAAAA 18086 || ||| ||||| || || |||| || |||||| ||||| ||||| |||| Sbjct 10841 CCG-GACGGGTAAG-AAGTCAGTTCAAGATCTCCTAATGGCTTACATGGAAAGGGAAAA 10897 Score = 221 bits (244), Expect = 3e-53 Identities = 500/744 (67%), Gaps = 22/744 (3%) Strand=Plus/Plus Query 13935 GACACCATGATTATGGCCTTCCGACACGCGCTGCCGGGGAGTCTCGACATGCAATGCCAG 13994 ||||| ||| | ||||| |||| ||||| ||||||| ||||| | | ||| | Sbjct 7014 GACACAATGGTCGAGGCCTACCGATACGCGTTGCCGGGTTCGCTCGAGAAACTCTGCGAA 7073 Query 13995 GTGCTGGGCGTTGACGCAGAACACGCGAAGGATAAGGCTGGCAAGGCGCTGATCAAACGC 14054 ||||| |||| || || | ||| || |||||||| || |||||| ||||| | ||| Sbjct 7074 GTGCTAAACGTTCCCGTGGAGCTCGCCAAAGATAAGGCGGGTAAGGCGTTGATCCAGCGC 7133 Query 14055 TTCTGTAAGCCAACCCCTAAGACCTACAAAATCCGCCGCTACACCCGCGAGACTCACCCT 14114 |||||||| || || ||||||| ||||| || || |||||||| |||| ||||| Sbjct 7134 TTCTGTAAACCCACGCCTAAGAATTACAAGATACGGCGCTACACAAAGCAGACGCACCCC 7193 Query 14115 GAAGAATGGGCTAAA---TTCCTGCGCTATGCCGCGCTGGATATCATCGCGATGAGGGAA 14171 ||||||||| ||| || | ||| || || ||||||| | ||| | || Sbjct 7194 GAAGAATGG---AAACGCTTTGTAGACTACGCACGGCGCGATATCACTTCTATGCGTGAG 7250 Query 14172 GTCTATTGGCGCATACCGGACTGGGGTAATACGCCGAAGGAAGACGAAATCCTGCTTATT 14231 | || | || | || ||| ||| || ||| || ||| | | || Sbjct 7251 GCCTTCTACCGACTGCCAACATGGAACTCCACGGAGATTGAAAACCGGATCTTAGTGCTT 7310 Query 14232 GACCAGTTGATTAACGACCGCGGCTTCTATGTGGACGTTGACCTGGCACGCGCTGCGATC 14291 |||||| | ||||| ||||| || || || || || || || || || ||| | Sbjct 7311 GACCAGATCATTAATGACCGAGGGTTTTACGTCGATACCGAGCTTGCTCGTTGCGCGGTA 7370 Query 14292 AAAGCGGTACAGGCGCATAAGGAAGAATTAAAGGAAGAAGCCTGGGAGCGCTTCGGCGGT 14351 | || |||||| ||||||| ||||| | || | || || || | |||| | Sbjct 7371 CAGGCCATACAGGAGCATAAGAAAGAACTTAAAGCCGAGGCTATGGCCAAATACGGC--T 7428 Query 14352 AAG--CTAACCGGCAATGACTTCCTGCCCGCGCTGCGCGACCTCGCGCCTGCGTTCACAA 14409 || || ||||| || |||||||| || |||||| || || || ||| ||| Sbjct 7429 CAGGTCTTACCGGTGCGGATTTCCTGCCGGCATTGCGCGGTCTAGCCCCGGCGCACACCG 7488 Query 14410 TCCACAACGCGCAGAAATC---CACGCTTAACGACCTGCTGGAAGATCCAGACTTCCCGG 14466 | | || || ||||| | | ||| |||||||| ||||||||||| |||| | Sbjct 7489 TACCGAATGCCCAGAAGGCGGTCTTGCTG---GACCTGCTAGAAGATCCAGATCTCCCAG 7545 Query 14467 ACGAAGGCAAAGCGCTTATC---GAGATGCGCCTCGGTGCGTCATCCACGGCGTCGACTA 14523 |||||| | ||| ||||| || ||||||||||| || | || ||||| ||||| | Sbjct 7546 ACGAAGCC--CGCG-TTATCATTGAAATGCGCCTCGGCGCAGCGTCAACGGCATCGACAA 7602 Query 14524 AGTACAATCCGCTCGTTAATGGCCTATCCGCCGATGGTCGCCGCCGTGGGTGTCTTCAGT 14583 | ||||| || || | | || || |||||||| || || ||||| || |||||||| | Sbjct 7603 AATACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGCCGGCGCCGGGGTTGTCTTCAAT 7662 Query 14584 ATGGCGGCGCAAAGCGCACGCTACGCTGGGCCGGTAAAGGCTTCCAGCCGCAAAACCTGG 14643 |||| ||||| ||||| || ||| | ||||| || |||||| || ||||| || || | Sbjct 7663 ATGGTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGAGGCTTTCAACCGCAGAATCTTG 7722 Query 14644 CACGCGGCGAATATAGCGACGACC 14667 |||| || | || |||||||| Sbjct 7723 CACGTGGGTATTACCACGACGACC 7746 Score = 219 bits (242), Expect = 1e-52 Identities = 492/728 (68%), Gaps = 16/728 (2%) Strand=Plus/Plus Query 7396 GAAGCCACGCGGCGCTTGCTTGATGCCGTTACGTGATTTTTCGTGATACAGGTTAAGTTG 7455 |||||| | |||| |||||| | ||||||||| |||||||||||||| || || | || Sbjct 551 GAAGCCCCTTGGCGATTGCTTCACGCCGTTACGGGATTTTTCGTGATAAAGATTGATTTT 610 Query 7456 TCCCGGCTGGTTGTCG-TCCGGTTGTTCCAGGAAGAACGCAGAATCAACAGCACCATGCA 7514 ||| || || | | || || || || | || || || ||||| || |||||||||| Sbjct 611 ACCCAT-TGATTCTGGATCAGGCTGCTCGATAAAAAAGGCCGAATCCACTGCACCATGCA 669 Query 7515 GCGCACCGGATCCGCGTGGGGTTC-TGCTGCCGTTTGCACCTTTCGCGGGGTGGTGGATG 7573 |||| ||||| ||||| | | | || || | | ||||| || ||||| || | | Sbjct 670 GCGCGCCGGAACCGCGCGCAGAGCGTGACGC-GCCACCCCCTTTTGCCGGGTGATGAACG 728 Query 7574 ACGCCCGCACTGCCACCTGTATTTTCCGCAATGGCTTTCAGCGCTTTGACCACTTCACCC 7633 ||||| || || || || | || ||||||| || |||||||| ||| Sbjct 729 ACGCCAGCCGATCCGCCGGTTGCGATAGAGATCTCTTTCAGGGCGCGTACCACTTCCCCC 788 Query 7634 ATATCGCTGGCGTTGTTCTCGTCGAACGGTTTAGCCTCGGCGGACCGCAGCGCAACAGTC 7693 ||||| ||| | ||||| |||||||| | |||| || || | || | |||| Sbjct 789 ATATCTGCCGCGCTATTCTCATCGAACGGCCGAAGGTCGGAAGAGCGTAAAGCCATAGTC 848 Query 7694 TGGTTGAGTGAGTCGAACGCCACCAGGCCAACTGGTTCGCC----GTTAGCGGTGCGGTT 7749 ||||| || |||||||| || | || |||||| || || | | || || ||||| Sbjct 849 TGGTTTAGAGAGTCGAAGGCTATCATGCCAACAGGATCTTCACGGGCTATCG-TGCGG-- 905 Query 7750 GATGAAGCTGATAACTTCGCGCAAGCCGGATTTGCTGGTGATATCCCAGCCGCGTGATTG 7809 ||| || | | || |||| ||||| || | | ||| |||||||| | Sbjct 906 -ATGTAGTCGGTCACCCGGCGCTTGCCGGTCTTTGTTGAGATGTCCCAGCCCAATACCGA 964 Query 7810 CAGATCGATAATGTGCAGCTTGTCCAGGTCGTGCTCGTATTTAATCTGCAATGCTTCTTT 7869 || |||| ||||||||| | ||||| | | || || ||||| | || | ||| Sbjct 965 GAGGTCGACTATGTGCAGCCAATTGAGGTCATCTTGATACTTTATCTGGAGCGCCTGTTT 1024 Query 7870 ACGCTGATTTGAGG-CT-TCGCCACCTTCCGCATCGAAATAGAAGCAATGCGACTGGACT 7927 | | | |||| || ||||||||||| ||||||| |||||||||||| || | || Sbjct 1025 CC--TTAAGTGAGAACTCTCGCCACCTTCGGCATCGAGATAGAAGCAATGAGATTTGATA 1082 Query 7928 ACCTTCGCACCACCAAACGGAATACCAGCGGCAACCGCACCCATCTGCCCCAGCACATAG 7987 |||||| || |||| || || |||||||| || || |||| ||| || || || Sbjct 1083 ACCTTCTGCCCCGCAAAAGGTATGCCAGCGGCGACAGCGGCCATAGCCCCAAGGACGAAG 1142 Query 7988 AAGGACTTGCCGATGTTCGACTCGCCCGCCATATACCAGGTCGATTTAAAGTTAATCAGA 8047 || || ||||| ||||| || ||||||||| ||||| |||||| ||||| | | Sbjct 1143 AACGATTTGCCTATGTTTGATTCGCCCGCCGCGTACCACGTCGATCGGAAGTTTAAAAAC 1202 Query 8048 CCTTCGATGATCGGGTCGTGTTTACTGAATAGTGCGACCGGCTCGTTATCCAGATCCGCA 8107 || || |||||||| ||| ||| |||| | || ||| || || || ||| || Sbjct 1203 CCATCAATGATCGGCACGTTCTTAGTGAACAAGGCAGACGGTTCATTCATCAAATCGGCG 1262 Query 8108 TCGGTGCA 8115 |||||||| Sbjct 1263 TCGGTGCA 1270 Score = 91.5 bits (100), Expect = 4e-14 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 12870 AAGTGGATGGACCGCCACTACGCCCTGGATTCTAAGGAATGCGCAGTTCGCGACGGTGAC 12929 || ||| | |||||||| |||| | ||| ||||| || ||| || |||||||||||| Sbjct 5307 AAATGGTTTGACCGCCATTACGGACAGGACTCTAAAGAGTGCTGTGTGCGCGACGGTGAC 5366 Query 12930 GAGCGCGACGAAGTAACCGAAGAATTCGAAGGCATGTTGTACATCAATGCCAAATCGTTC 12989 ||||||| ||| || ||||| |||| | ||| ||||||||| || ||| Sbjct 5367 CAGCGCGAAGAACCAAGTCCTGAATTTGAAGACGCTTTGATCATCAATGCTAAGCGCTTC 5426 Query 12990 AAACAGCCGATCATTCAAACGTCACTCGGCGAGAAGCAGACGGAACAAGGTCTGACCGTA 13049 || ||||||| || ||| ||| ||||| ||||||| ||| || ||||| | Sbjct 5427 AAGCAGCCGAGGATCTTAACTTCAACGGGCGAAGAGCAGACCGAATCTGGCCTGACTATC 5486 Query 13050 GAAGGCGACGAGATCGAAGG 13069 || || ||||||||||| Sbjct 5487 GACAATGATGAGATCGAAGG 5506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138711384945588