Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019452.1 Length=156628 Score E Sequences producing significant alignments: (Bits) Value seq2788 93.3 4e-14 >seq2788 Length=136445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 285/434 (66%), Gaps = 10/434 (2%) Strand=Plus/Plus Query 52910 TTCACCAGGCGCTCGAACATGACGCGGTTAATCTGAATCCCATAGTCGATACGGCGTTCA 52969 || ||||| |||| |||| | ||| ||||| | || ||||| || | || | Sbjct 19247 TTAACCAGACGCTGATACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACG 19306 Query 52970 CGGTTCTCTTCCAATCCACGGTTGTTTTTGAGAACAACGACATCATCAAATTGATAATGC 53029 ||||| |||| | |||||||||||||| ||||| | | |||| || ||| Sbjct 19307 CGGTTGCCTTCAACACCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGC 19366 Query 53030 CAGATGGGAACATAGCATGTT-GCCGATCCACCACGGATACCGCCTTGAGAGCAAGACTT 53088 || || || | | || | | || | || || || | ||||| |||||||| || || Sbjct 19367 CACATCGGGT-AGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTT 19425 Query 53089 CAGGGCACCAGTC---AAATACTTGATGAATGGAAC-CAGACCTGTATGGACCATTTCCC 53144 | || ||| || | ||| ||| || | ||| || ||||||| ||| | Sbjct 19426 AACCGCC---GTCTGGAAGTGCTTATAGAACGGGATACAG-CCGGTATGGAATGCTTCAC 19481 Query 53145 CTTTACGGATAGGGCTACCGATGCCACGAATTGCCCCAACATCGAATCCAATGCCAGCAC 53204 | || || |||||||| | |||| || ||| | | || || || || || | Sbjct 19482 CGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGC 19541 Query 53205 GTTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAGTCCAATGTATCAC 53264 | | ||||| || | ||||||| | | || || || || ||||||| | || | Sbjct 19542 GCTGTGAAACGTATTTCACGATGGCGCTGGAGGTCGCGTTGATGGAGTCCAGGCTGTCGC 19601 Query 53265 CAGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGGACGCCGGACATAA 53324 | | ||||| ||| |||||||||||||| || ||||||||||| ||||||||||||| Sbjct 19602 CGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAA 19661 Query 53325 TAGGTGTTGGAAGA 53338 | || || || ||| Sbjct 19662 TTGGCGTAGGCAGA 19675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500210682598080