Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq54952 179 1e-40 seq68103 149 2e-31 seq30671 107 6e-19 seq37156 84.2 7e-12 >seq54952 Length=1307 Score = 179 bits (198), Expect = 1e-40 Identities = 274/405 (68%), Gaps = 53/405 (13%) Strand=Plus/Plus Query 7889 GAGGAATATCAGGACGCCTGCCGCAAAATAGCGGATGCGCTGGGGATCTGATT--ATGAG 7946 || || ||||| | || |||||| | ||||| || ||| ||||||| ||||| ||||| Sbjct 117 GAAGAGTATCAACAGGCATGCCGCCAGATAGCTGACGCGTTGGGGATTTGATTCTATGAG 176 Query 7947 CATGAACTTAATGGCGAAAGCCATGAGCCGAAAAGTCGGTAACCCACTACGTAAGCTGGT 8006 ||||| | ||||||| ||||| ||| | |||||| || || | || ||||| |||| Sbjct 177 CATGACCCTAATGGCAAAAGCTATGGGTATAAAAGTTGGCAATTCCCTGCGTAAATTGGT 236 Query 8007 GCTCATTAAGCTGGCTGATAACGCGAATGACAAAGGTGAATGCTGGCCGTCA-------- 8058 || || || || ||||||||||| ||||||||||| || |||||||| ||| Sbjct 237 TCTGATCAAACTTGCTGATAACGCCAATGACAAAGGGGAGTGCTGGCCTTCANNNNNNNN 296 Query 8059 -------------------------------------------TACCAGCATGTCGCTGA 8075 || ||||| || || || Sbjct 297 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAGCACGTTGCAGA 356 Query 8076 TCAGTGTGAATGCAGCAAAAGCGCAGTAAAGGCGCACATCACAGCATTAATAAAAATGGG 8135 ||||| |||||||||||||||||||| || || || ||| | || | |||| ||||| Sbjct 357 CCAGTGCGAATGCAGCAAAAGCGCAGTTAAAGCCCATATCGCCGCGCTGGTAAATATGGG 416 Query 8136 CTTTCTGTCAAAAGAAAACAGGCTGGGTGAAAACAACGGGAAGGGGAACACGTCGAACGT 8195 | || | || || || || | || |||| || || || || || ||||| || || || Sbjct 417 CCTTATCTCCAAGGAGAATCGCCTTGGTGTGAATAATGGCAAAGGTAACACTTCCAATGT 476 Query 8196 TTACTATCTGACGCTGGATAACCCTGTGCCACCAAAAAGCACAGC 8240 ||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 477 CTACTATCTGACGCTGGATACCCCTGTGTCATCAAAAAGCACAGC 521 Score = 91.5 bits (100), Expect = 5e-14 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 8438 TTCTGGATACGTACCACGAAATCCTCCCTGACATGCCACGCGTTCAGATTT-TGACTGAC 8496 |||| || |||| ||| |||| | ||||| |||||| ||| | | ||| |||| || Sbjct 758 TTCTTGAGGCGTATCACCAAATTTTACCTGAAATGCCA-GCGGTTAAATTGATGACCGAT 816 Query 8497 GCACGGAAAAAGACGATCCGCGCATTCTGGAAGAAATTTAAATTCACCCCTGACCGCTGG 8556 ||||| || |||| || | ||||||||||||||||| |||| || ||||||| Sbjct 817 GCACGCAAGAAGAGCTTCAGAAACTTCTGGAAGAAATTTAATTTCAACCAGAGCCGCTGG 876 Query 8557 CAGGCCTATTTGAAATATATCTCAACACACTGCCGCTGGATGATGGAAGACCGACCTAAT 8616 |||| ||||| | || ||| | | | |||||||||||| | || ||| |||| || Sbjct 877 GAGGCGTATTTAATTTACATCGCTGAAAATTGCCGCTGGATGCTCGAGGACAGACCGAAC 936 Query 8617 GG 8618 || Sbjct 937 GG 938 >seq68103 Length=1446 Score = 149 bits (164), Expect = 2e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 9821 CGCGCAGATAAACGCCCTCTACCATCCGACAGCCGAGACACAGGGCAGATCGAACAAGAC 9880 ||||||||||| ||||| | || |||||||| |||| | || ||||| || || ||| Sbjct 613 CGCGCAGATAAGCGCCCGCATCCGTCCGACAGTAAAGACTCCGGACAGATTGAGCAGGAC 554 Query 9881 TGTGACGTTTGGATCGGGCTATACCGTGACGCTGCTTATAACGAGCAGGCAGATAAAACG 9940 || |||||||||||||||||||||||||| || | ||||||| | | ||||| |||| Sbjct 553 TGCGACGTTTGGATCGGGCTATACCGTGATGCGGTTTATAACAAAAATTCAGATCCAACG 494 Query 9941 TTAATGGAACTCATTGTGAGGCTTAACCGCGAGGGGCCGAGCGGGACAGCTTACGCACAG 10000 | |||||| | ||| | | || ||||| || || | |||||||| ||||| || || Sbjct 493 CTGATGGAAATGATTTTACGTCTGAACCGTGAAGGCACTAGCGGGACCGCTTATGCCCAA 434 Query 10001 ATGATTGACGGATATATCAAGAGTATCCCA 10030 ||| ||||||| | |||| | |||| || Sbjct 433 ATGGTTGACGGCTCCATCAGGGATATCTCA 404 Score = 96.9 bits (106), Expect = 1e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 9420 CGCTGGTTTTCAGTCTGGAAATGACTGACAGGGGGATCATTGAGCGAATGATCGCACAGG 9479 ||||||||||||||||||||||||| ||| | | ||||||||||| ||| | || || | Sbjct 1067 CGCTGGTTTTCAGTCTGGAAATGACAGACCGCGCCATCATTGAGCGCATGGTTGCTCAAG 1008 Query 9480 AAGCGCTCATCAGTTCAAACCTGTTTTACAACGGCGAATACGACGATTCAAAGATGGCAC 9539 |||||| | | ||| | | |||||| ||| || ||||| | ||||||| Sbjct 1007 AAGCGCGGGTGAATTCTGAAATATTTTACGTTGGCTCCAACAACGATAGCGATATGGCAC 948 Query 9540 TGGCAATGGCTAAGGCTGGGGAGTTGGCCGAGT 9572 |||||||| ||||| || || ||||| |||| Sbjct 947 GTGCAATGGCGAAGGCCGGTGAATTGGCTGAGT 915 >seq30671 Length=1037 Score = 107 bits (118), Expect = 6e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 9299 ATGGCACCAAAACAAGCGTTACGCGGGTCACTCATTGTGATCGGGGCGCGCCCGAAAATG 9358 ||||| || || ||| | || || ||| | | | || || || || || ||||||||| Sbjct 17 ATGGCTCCTAAGCAAACCTTGCGAGGGGCGTTGGTGGTTATAGGCGCACGTCCGAAAATG 76 Query 9359 GGCAAGACCGCGACATACAACAAAATCGCTACGCATTTCGCATTAAATCATCGTCTCCCG 9418 ||||| ||| | || || ||||||||||| || ||||||||||| ||||| ||||| || Sbjct 77 GGCAAAACCTCAACCTATAACAAAATCGCGACACATTTCGCATTGAATCACCGTCTGCCA 136 Query 9419 TCGCTGGTTTTCAG 9432 ||||||||||||| Sbjct 137 ACGCTGGTTTTCAG 150 >seq37156 Length=2737 Score = 84.2 bits (92), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 21086 ACGTGCCAGCGCAATGCGTACCACTGCCAGCGGAACTGACACAGCCAGTGCTGGTGCCGC 21145 |||||||||||||||| ||| | |||||||| || | |||| || | ||||| | Sbjct 380 ACGTGCCAGCGCAATGTACACCGATACCAGCGGACCTATTAAAGCCGCTGTTAGTGCCAC 439 Query 21146 TGCCACCGGCTGCCGATTGACGTACGCACAGGCTGTTTACTGGATTGACCCGCTACTGAC 21205 | || || || ||| | ||||| ||||||||| |||||| |||||||||||||| Sbjct 440 TACCTCCCGC---CGAATAACGTATTGCCAGGCTGTTCTCTGGATGGACCCGCTACTGAC 496 Query 21206 GGTAATTGACCA 21217 | |||||||| Sbjct 497 CCTTATTGACCA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154675382056832