Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq2788 131 2e-25 seq6040 122 1e-22 seq7064 86.0 9e-12 >seq2788 Length=136445 Score = 131 bits (144), Expect = 2e-25 Identities = 258/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| || |||| || ||||| | ||||| |||| |||||||| ||||| ||| || Sbjct 19327 GTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGT 19386 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 |||| ||||| || | | || || || ||| |||||||| || ||||||||||| Sbjct 19387 CGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTT 19446 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 ||||| ||||| |||||||||| |||||| ||| |||||| || |||| ||| Sbjct 19447 ATAGAACGGGATACAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGC 19506 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATA--TAACTAATAATA 120176 ||| || ||||| || || || ||||| || || || ||| | || | | || Sbjct 19507 ACGGATGCGGCCAGCGTTGATGCCGATACCTGCGCGCTG--TGAAACGTATTTCACGATG 19564 Query 120177 GATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAA 120236 | || || |||| || || | ||| |||||| | || || || || || Sbjct 19565 GCGCTGGAGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAG 19624 Query 120237 CTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTA 120296 || || ||||| || |||||||| | || || ||| || || || | |||||||| Sbjct 19625 CTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTG 19684 Query 120297 AATAGAGAAGCCGCATTATA 120316 || ||| |||||| ||| Sbjct 19685 AAGGTTGAAACCGCATCATA 19704 >seq6040 Length=129903 Score = 122 bits (134), Expect = 1e-22 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 118276 GGCCCCTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCACTGGTTCAAG 118335 Query 198995 TCCAGTAGGGGCCACCAGAT 199014 ||||||||||||||||| || Sbjct 118336 TCCAGTAGGGGCCACCAAAT 118355 >seq7064 Length=97815 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 16193 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 16252 Query 199840 GTCCTGTATCACCGACCACTTAGCACAAA 199868 |||| | || ||||||| || ||||| Sbjct 16253 ATCCTCTCTCGCCGACCAATTCAAACAAA 16281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740160904986480